Seminarium „Biologia obliczeniowa i bioinformatyka”

Organizatorzy

• prof. dr hab. Anna Gambin
• dr Aleksander Jankowski
• dr hab. Bartosz Wilczyński, prof. ucz.

Informacje

Strona domowa

Dziedziny badań

• Biologia obliczeniowa i bioinformatyka

Lista referatów

• 14 czerwca 2023 10:15
  Bartosz Ambroży Greń (CeNT UW)
  Handcuffs and lassos in proteins in ideal polymers
  In general proteins are open chains, but some of them have some kind of extra closure (e.g. cysteine bridge, isopeptide bond, metal ion bridge) which alters their topology. Because of these closures we can find …

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• 7 czerwca 2023 10:15
  Mohammad Saqib (Faculty of Chemistry, UW)
  ML for Protein Secondary Structure Assignments
  

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• 31 maja 2023 10:15
  Torgeir R. Hvidsten (Norwegian University of Life Sciences)
  A comparative regulomics method for studying gene regulatory evolution
  

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• 24 maja 2023 10:15
  Barbara Domżał (MIM UW)
  Magnetstein: universal tool for complex mixture analysis in NMR spectroscopy
  

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• 17 maja 2023 10:15
  Konrad Łukaszyk (CeNT UW)
  Deciphering single cells niche composition and their effect on hair follicle and dermal papillae Stem Cells regulation during the hair regeneration cycle
  

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• 10 maja 2023 10:15
  Marcin Wierzbiński (MIM UW)
  Approaching the hydrophobic-polar (HP) protein folding model with the Monte Carlo Method and A* algorith)
  The modeling of protein folding, a biological issue, is particularly intriguing. The deterministic solution of the so-called hydrophobic-polar (HP) protein folding model is one such problem. It turns out that the Monte Carlo methods used …

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• 26 kwietnia 2023 10:15
  Kazimierz Oksza-Orzechowski (MIM UW)
  CaClust: mapping cells to the clonal structure in Follicular Lymphoma
  

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• 19 kwietnia 2023 10:15
  Senbai Kang (MIM UW)
  DelSIEVE: joint inference of single-nucleotide variants, deletions, and cell phylogeny from single-cell DNA sequencing data
  

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• 12 kwietnia 2023 10:15
  Jan Poleszczuk (Institute of Biocybernetics and Biomedical Engineering PAS and Maria Sklodowska-Curie National Research Institute of Oncology)
  AI/ML in Polish healthcare system: current opportunities and challenges
  

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• 5 kwietnia 2023 10:15
  Karol Wróblewski (CNBCh UW)
  CABS-flex as a de novo structure prediction tool for cyclic peptides
  Cyclic peptides have become an attractive class of molecules in drug design due to their diverse biological activities and increased stability. However, their design and synthesis can be challenging due to their complex three-dimensional structures. …

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• 29 marca 2023 10:15
  Teresa Przytycka (National Library of Medicine/National Institutes of Health)
  Delineating interactions between mutational signatures, cellular processes, and environment through computational approaches
  Cancer genomes accumulate many somatic mutations resulting from carcinogenic exposures, cancer-related aberrations of DNA maintenance machinery, and normal stochastic events.  These processes often lead to distinctive patterns of mutations, called mutational signatures.  However interpreting mutation …

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• 22 marca 2023 10:15
  Andrzej Mizera (MIM UW)
  Divide & Control: An Efficient Decomposition-based Approach Towards the Control of Asynchronous Boolean Networks
  

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• 15 marca 2023 10:15
  Magda Markowska (MIM UW)
  CONSET: joint copy number and single nucleotide variant event tree model of evolutionary tumor history for single-cell data
  

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• 8 marca 2023 10:15
  Stanisław Jastrzębski (Molecule.one)
  On the Implications of the Simplicity Bias in Deep Nets for the “AI Scientist”: The Good, The Bad, and The Ugly
  

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• 1 marca 2023 10:15
  Magdalena Machnicka (MIM UW)
  Analysis of trans-homolog chromatin interactions based on Hi-C data
  

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