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Publikacje
Michał Startek
Liczba publikacji: 212024
- Piotr Prostko , Piotr Radziński , Michał Ciach, Youzhong Liu, Michał Startek , Frederik Lermyte, Thomas De Vijlder, Anna Gambin , Simon Appeltans, Dirk Valkenborg, MIND4OLIGOS: Determining the Monoisotopic Mass of Oligonucleotides Observed in High-Resolution Mass Spectrometry, Analytical Chemistry, 96 (23) 2024, s. 9343-9352. Zobacz w PBN
- Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Startek , Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd M. H. Dijkstra, Yasset Perez-Riverol, Hannes Röst, Oliver Kohlbacher, Timo Sachsenberg, OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data, NATURE METHODS, 2024. Zobacz w PBN
2022
- Piotr Radziński , Dirk Valkenborg, Michał Startek , Anna Gambin , Envemind: Accurate Monoisotopic Mass Determination Based On Isotopic Envelope, JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 33 (11) 2022, s. 2063-2069. Zobacz w PBN
2021
- Mateusz K. Łącki, Michał Startek , Sven Brehmer, Ute Distler, Stefan Tenzer, OpenTIMS, TimsPy, and TimsR: Open and Easy Access to timsTOF Raw Data, Journal of Proteome Research, 20 (4) 2021, s. 2122-2129. Zobacz w PBN
2020
- Piotr Dittwald, Ewa Gajewska, Bartosz Grzybowski, Jacek Młynarski, Oskar Popik, Michał Startek , Sara Szymkuć, Algorithmic Discovery of Tactical Combinations for Advanced Organic Syntheses, Chem, 6 (1) 2020, s. 280-293. Zobacz w PBN
- Mateusz K. Łącki, Dirk Valkenborg, Michał Startek , IsoSpec2: Ultrafast Fine Structure Calculator, Analytical Chemistry, 92 (14) 2020, s. 9472-9475. Zobacz w PBN
- Michał Aleksander Ciach, Grzegorz Skoraczyński, Szymon Majewski, Dirk Valkenborg, Michał Startek , Anna Gambin , Błażej Miasojedow , Masserstein: Linear regression of mass spectra by optimal transport, Rapid Communications in Mass Spectrometry, 2020. Zobacz w PBN
2019
- Neo Christopher Chung , Błażej Miasojedow , Michał Startek , Anna Gambin , Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data, BMC Bioinformatics, 20 (S15) 2019, s. 1-11. Zobacz w PBN
- Mateusz Krzysztof Łącki, Frederik Lermyte, Błażej Miasojedow , Michał Startek , Frank Sobott, Dirk Valkenborg, Anna Gambin , masstodon: A tool for assigning peaks and modeling electron transfer reactions in top-down mass spectrometry, Analytical Chemistry, 91 (3) 2019, s. 1801-1807. Zobacz w PBN
2018
- Yubai Zhou, Alexei Toutchkine, Lindsey Rickershauser, Gregory J. Kirkovits, Michael P. McCormack, Milan Mrksich, Sarah L. J. Trice, Michał Startek , Manishabrata Bhowmick, Heather Lima, Karol Molga, Piotr Dittwald, Ariel Adamski, Bartosz Grzybowski, TOMASZ KLUCZNIK, BARBARA MIKULAK-KLUCZNIK, Sara Szymkuć, Ewa Gajewska, Rafał Roszak, Bianka Sieredzińska, Efficient Syntheses of Diverse, Medicinally Relevant Targets Planned by Computer and Executed in the Laboratory, Chem, 4 (3) 2018, s. P522-532. Zobacz w PBN
- Michał Aleksander Ciach, Anna Gambin , Szymon Majewski, Błażej Miasojedow , Wanda Niemyska , Michał Startek , The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra with Application to Spectral Deconvolution, 18th Workshop on Algorithms in Bioinformatics, Helsinki, Finland, 20 sierpnia 2018 - 22 sierpnia 2018. Zobacz w PBN
2017
- Michał Startek , Jakub Nogły, Dariusz Grzebelus, Anna Gambin , Agnieszka Gromadka, Inferring transposons activity chronology by TRANScendence - TEs database and de-novo mining tool, BMC Bioinformatics, 18 (suppl. 12) 2017, s. 57-66. Zobacz w PBN
- Mateusz K Łącki, Michał Startek , Dirk Valkenborg, Anna Gambin , IsoSpec: Hyperfast Fine Structure Calculator, Analytical Chemistry, 89 (6) 2017, s. 3272–3277. Zobacz w PBN
2016
- Michał Startek , Michał Bajczyk, Piotr Dittwald, Ewa P. Gajewska, Bartosz A. Grzybowski, Tomasz Klucznik, Karol Molga, Sara Szymkuć, Computer-Assisted Synthetic Planning: The End of the Beginning, Angewandte Chemie - International Edition, 55 (20) 2016, s. 5904-5937. Zobacz w PBN
2015
- Ian M. Campbell, Anna Gambin , Tomasz Gambin, Patricia Hixson, Chad A. Shaw, Paweł Stankiewicz, Michał Startek , Przemyslaw Szafranski, Genome-wide analyses of LINE–LINE-mediated nonallelic homologous recombination, Nucleic Acids Research, 2015. Zobacz w PBN
- Anna Gambin , Dariusz Grzebelus, Michał Startek , Krzysztof Stawujak, MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula, Genetica, 2015. Zobacz w PBN
2013
- Anna Gambin , Przemyslaw Szafranski, Paweł Stankiewicz, Michał Startek , Marta Smyk, Chromosome conformation capture-on-chip analysis of long-range cis-interactions of the SOX9 promoter, Chromosome Research, 2013. Zobacz w PBN
- Pierre Capy, Anna Gambin , Dariusz Grzebelus, Arnaud Le Rouzic, Michał Startek , Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations, Theoretical Population Biology, 90 (Complete) 2013, s. 145-151. Zobacz w PBN
- Anna Gambin , Jarosław Paszek , Michał Startek , Tomasz Gambin, Dariusz Grzebelus, Krzysztof Walczak, TIRfinder: A Web Tool for Mining Class II Transposons Carrying Terminal Inverted Repeats, Evolutionary Bioinformatics, 9 2013, s. 17-27. Zobacz w PBN
2012
- A. Bułak, Anna Gambin , G. Kucherov, Sławomir Lasota, L. Noé, Michał Startek , Maciej Sykulski, Efficient alternatives to PSI-BLAST, Bulletin of the Polish Academy of Sciences: Technical Sciences, 2012. Zobacz w PBN
2011
- Anna Gambin , Gregory Kucherov, Sławomir Lasota , Laurent Noe, Michał Startek , Maciej Sykulski, Subset seed extension to protein BLAST, Proc. Int. Conf. on Bioinformatics Models, Methods and Algorithms Bioinformatics'11, 2011. Zobacz w PBN