Publications

Wanda Niemyska

Number of publications: 35

2024

• Wanda Niemyska , Sunandan Mukherjee, Bartosz Greń, Szymon Niewieczerzał, Janusz Bujnicki, Joanna Sułkowska, Discovery of a trefoil knot in the RydC RNA: Challenging previous notions of RNA topology, Journal of Molecular Biology, 436 (6) 2024, p. 168455. See in PBN
• Luca Tubiana, Gareth P. Alexander, Agnese Barbensi, Dorothy Buck, Julyan H.E. Cartwright, Mateusz Chwastyk, Marek Cieplak, Ivan Coluzza, Simon Čopar, David J. Craik, Marco Di Stefano, Ralf Everaers, Patrícia F.N. Faísca, Franco Ferrari, Achille Giacometti, Dimos Goundaroulis, Ellinor Haglund, Ya-Ming Hou, Nevena Ilieva, Sophie E. Jackson, Aleksandre Japaridze, Noam Kaplan, Alexander R. Klotz, Hongbin Li, Christos N. Likos, Emanuele Locatelli, Teresa López-León, Thomas Machon, Cristian Micheletti, Davide Michieletto, Antti Niemi, Wanda Niemyska , Szymon Niewieczerzał, Francesco Nitti, Enzo Orlandini, Samuela Pasquali, Agata Perlińska, Rudolf Podgornik, Raffaello Potestio, Nicola M. Pugno, Miha Ravnik, Renzo Ricca, Christian M. Rohwer, Angelo Rosa, Jan Smrek, Anton Souslov, Andrzej Stasiak, Danièle Steer, Joanna Sułkowska, Piotr Sułkowski, De Witt L. Sumners, Carsten Svaneborg, Piotr Szymczak, Thomas Tarenzi, Rui Travasso, Peter Virnau, Dimitris Vlassopoulos, Primož Ziherl, Slobodan Žumer, Topology in soft and biological matter, Physics Reports, 1075 2024, p. 1-137. See in PBN

2023

• Agata P. Perlinska, Wanda Niemyska , Bartosz A. Gren, Marek Bukowicki, Szymon Nowakowski, Joanna I. Sulkowska, Paweł Rubach, AlphaFold predicts novel human proteins with knots, Protein Science, 2023. See in PBN

2022

• Wanda Niemyska , Paweł Rubach, Bartosz Greń, Mai Lab Nguyen, Wojciech Garstka, Fernando Bruno da Silva, Eric J Rawdon, Joanna Sułkowska, AlphaKnot: server to analyze entanglement in structures predicted by AlphaFold methods, Nucleic Acids Research, 2022. See in PBN
• Michał Baczyński, Pedro Berruezo, Piotr Helbin, Sebastia Massanet, Wanda Niemyska , Daniel Ruiz-Aguilera, On the Sheffer stroke operation in fuzzy logic, Fuzzy Sets and Systems, 431 2022, p. 110-128. See in PBN

2021

• Bartosz Ambroży Greń, Paweł Dąbrowski-Tumański, Joanna Sułkowska, Wanda Niemyska , Lasso Proteins—Unifying Cysteine Knots and Miniproteins, POLYMERS, 13 (22) 2021, p. 3988. See in PBN

2020

• Wanda Niemyska , Kenneth C. Millett, Joanna Sułkowska, GLN: a method to reveal unique properties of lasso type topology in proteins, Scientific Reports, 10 (1) 2020. See in PBN
• Pawel Dabrowski-Tumanski, Pawel Rubach, Wanda Niemyska , Bartosz Ambrozy Gren, Joanna Sułkowska, Topoly: Python package to analyze topology of polymers, BRIEFINGS IN BIOINFORMATICS, 2020. See in PBN

2019

• Wanda Niemyska , Szymon Niewieczerzał, Joanna Sułkowska, Defining and detecting links in chromosomes, Scientific Reports, 9 2019, p. 11753:1-10. See in PBN
• Michał Baczyński, Wanda Niemyska , On some equation related to the distributivity laws of fuzzy implications. Jensen equation extended to the infinity, Fuzzy Sets and Systems, 359 2019, p. 95-111. See in PBN
• Aleksandra Gierut, Paweł Dąbrowski-Tumański, Wanda Niemyska , Kenneth Millett, Joanna Sułkowska, PyLink: a PyMOL plugin to identify links, Bioinformatics, 35 (17) 2019, p. 3166–3168. See in PBN
• Piotr Helbin, Michał Baczyński, Przemysław Grzegorzewski, Wanda Niemyska , Some properties of fuzzy implications based on copulas, Information Sciences, 502 2019, p. 1-17. See in PBN

2018

• Joanna Sułkowska, Szymon Niewieczerzał, Aleksandra Jarmolińska, Jonathan Siebert, Peter Virnau, Wanda Niemyska , KnotGenome: a server to analyze entanglements of chromosomes, Nucleic Acids Research, 46 (W1) 2018, p. W17-W24. See in PBN
• Piotr Helbin, Wanda Niemyska , Pedro Berruezo, Sebastia Massanet, Daniel Ruiz-Aguilera, Michał Baczyński, On Fuzzy Sheffer Stroke Operation, 17th International Conference Artificial Intelligence and Soft Computing, Zakopane, Poland, 3 June 2018 - 7 June 2018. See in PBN
• Michał Baczyński, Wanda Niemyska , Szymon Wąsowicz, Sheffer stroke fuzzy implications, The 10th Conference of the European Society for Fuzzy Logic and Technology, Warszawa, Poland, 11 September 2017 - 15 September 2017. See in PBN
• Michał Aleksander Ciach, Anna Gambin , Szymon Majewski, Błażej Miasojedow , Wanda Niemyska , Michał Startek , The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra with Application to Spectral Deconvolution, 18th Workshop on Algorithms in Bioinformatics, Helsinki, Finland, 20 August 2018 - 22 August 2018. See in PBN

2017

• Michał Baczyński, Przemysław Grzegorzewski, Piotr Helbin, Radko Mesiar, Wanda Niemyska , Fuzzy implications based on semicopulas, Fuzzy Sets and Systems, 323 2017, p. 138-151. See in PBN
• Paweł Dśbrowski-Tumański, Aleksandra I. Jarmolińska, Wanda Niemyska , Eric J. Rawdon, Kenneth C. Millett, Joanna Sułkowska, LinkProt: a database collecting information about biological links, Nucleic Acids Research, 2017. See in PBN
• Aleksandra Gierut, Wanda Niemyska , Paweł Dąbrowski-Tumański, Piotr Sułkowski, Joanna Sułkowska, PyLasso: a PyMOL plugin to identify lassos, Bioinformatics, 33 (23) 2017, p. 3819–3821. See in PBN
• Michał Baczyński, Wanda Niemyska , Some new solutions of the distributivity law I(x, S(y, z)) = S(I(x, y), I(x, z)) among R-implications and triangular conorms, Joint 17th World Congress of International Fuzzy Systems Association and 9th International Conference on Soft Computing and Intelligent Systems, Otsu, Japan, 27 June 2017 - 30 June 2017. See in PBN

2016

• Paweł Dąbrowski - Tumański, Ellinor Haglund, Michał Kadlof, Wanda Niemyska , Joanna Sułkowska, Piotr Sułkowski, Complex lasso: new entangled motifs in proteins, Scientific Reports, 2016. See in PBN
• Michał Baczyński, Wanda Niemyska , Distributivity of Implication Functions over Decomposable Uninorms Generated from Representable Uninorms in Interval-Valued Fuzzy Sets Theory, 16th International Conference on Information Processing and Management of Uncertainty in Knowledge-Based Systems, Eindhoven, the Netherlands, 20 June 2016 - 24 June 2016. See in PBN
• Paweł Dąbrowski-Tumański, Wanda Niemyska , Paweł Pasznik, Joanna Sułkowska, LassoProt: server to analyze biopolymers with lassos, Nucleic Acids Research, 2016. See in PBN
• Michał Baczyński, Przemysław Grzegorzewski, Piotr Helbin, Wanda Niemyska , Properties of the Probabilistic Implications and S-Implications, Information Sciences, 2016. See in PBN

2015

• Michał Baczyński, Wanda Niemyska , On the functional equation f(m_1(x+y))=m_2(f(x)+f(y)) for injective function m_2, 8th International Summer School on Aggregation Operators, Katowice, Poland, 7 July 2015 - 10 July 2015. See in PBN
• Roman Ger, Wanda Niemyska , On two functional equations connected with distributivity of fuzzy implications, Commentationes Mathematicae, 55 (2) 2015, p. 163-169. See in PBN
• Michał Baczyński, Wanda Niemyska , Michał Baczyński, Proceedings of 8th International Summer School on Aggregation Operators (AGOP 2015), 2015. See in PBN
• Michał Baczyński, Wanda Niemyska , Some functional equations connected to the distributivity laws for fuzzy implications and triangular conorms, IEEE International Conference on Fuzzy Systems (FUZZ-IEEE), Istanbul, Turkey, 2 August 2015 - 5 August 2015. See in PBN

2014

• Michał Jamróz, Kenneth C. Millett, Wanda Niemyska , Eric J. Rawdon, Andrzej Stasiak, Joanna Sułkowska, Piotr Sułkowski, KnotProt: a database of proteins with knots and slipknots., Nucleic Acids Research, 2014. See in PBN
• Wanda Niemyska , Michał Baczyński, Tomasz Szostok, On a functional equation related to the distributivity of fuzzy implications over triangular norms and conorms, Kybernetika, 2014. See in PBN
• Michał Baczyński, Wanda Niemyska , On the Distributivity Equation I(x,U1(y,z))=U2(I(x,y),I(x,z))I(x,U1(y,z))=U2(I(x,y),I(x,z)) for Decomposable Uninorms (in Interval-Valued Fuzzy Sets Theory) Generated from Conjunctive Representable Uninorms, 11th International Conference on Modeling Decisions for Artificial Intelligence, Tokyo, Japan, 29 October 2014 - 31 October 2014. See in PBN

2013

• Michał Baczyński, Tomasz Szostok, Wanda Niemyska , On a functional equation related to distributivity of fuzzy implications, IEEE International Conference on Fuzzy Systems 2013, Hyderabad, India, 7 July 2013 - 10 July 2013. See in PBN

Others

• Michał Baczyński, Piotr Helbin, Wanda Niemyska , Pedro Berruezo, Sebastia Massanet, Daniel Ruiz-Aguilera, On Fuzzy Sheffer Stroke Operation, Artificial intelligence and soft computing : 17th International conference, ICAISC 2018, Zakopane, Poland, June 3-7, 2018. Proceedings, , p. 642-651. See in PBN
• Michał Baczyński, Wanda Niemyska , Szymon Wąsowicz, Sheffer Stroke Fuzzy Implications, Advances in Intelligent Systems and Computing 3, , p. 13-24. See in PBN
• Michał Baczyński, Wanda Niemyska , Some new solutions of the distributivity law I(x, S(y, z)) = S(I(x, y), I(x, z)) among R-implications and triangular conorms, IFSA SCIS 2017 June 27-30, 2017, Otsu, Japan : the 17th World Congress on International Fuzzy Systems Association and the 9th International Conference on Soft Computing and Intelligent Systems., , p. 1-6. See in PBN