Seminar Computational Biology and Bioinformatics

Organizers

• prof. dr hab. Anna Gambin
• dr Aleksander Jankowski
• dr hab. Bartosz Wilczyński, prof. ucz.

Information

Home page

Research fields

• Computational Biology and Bioinformatics

List of talks

• Jan. 25, 2023, 10:15 a.m.
  Michał Ciach (MIM UW)
  The interkingdom gene transfer in 44 basal fungi and the open problems in large scale phylogenetic studies of horizontal gene transfer
  

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• Jan. 18, 2023, 10:15 a.m.
  Agnieszka Geras (MiNI PW; MIM UW)
  A novel probabilistic model for cell type identification in spatial transcriptomics and single-cell RNA sequencing data
  

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• Jan. 11, 2023, 10:15 a.m.
  Barbara Poszewiecka (MIM UW)
  From 48 to 46 chromosomes: a novel targeted assembler of segmental duplications unravels the complexity of the HSA2 fusion
  

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• Dec. 21, 2022, 10:15 a.m.
  Marcin Możejko (MIM UW)
  Set and graph auto-encoders for the IMC data
  

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• Dec. 14, 2022, 10:15 a.m.
  Szymon Nowakowski (MIM UW)
  AlphaFold2 from the engineering perspective
  

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• Dec. 7, 2022, 10:15 a.m.
  Paweł Górecki (MIM UW)
  COCOON 2022 paper with N. Rutecka and J. Tiuryn (Rooting gene trees via phylogenetic networks)
  

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• Nov. 30, 2022, 10:15 a.m.
  Marta Stępniewska-Dziubińska (NVIDIA)
  Deep Learning for Drug Discovery at NVIDIA
  

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• Nov. 23, 2022, 10:15 a.m.
  Aleksandra Cabaj (Nencki Institute of Experimental Biology)
  Modelling the impact of Hypoxia Inducible Factors binding on gene expression in human endothelial cells during hypoxia
  

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• Nov. 16, 2022, 10:15 a.m.
  Michał Burdukiewicz (Autonomous University of Barcelona)
  The impact of negative data sampling on antimicrobial peptide prediction
  Peptydy to krótkie łańcuchy aminokwasowe, które pełnią wiele ważnych biologicznych funkcji (np. przeciwdrobnoustrojowe). Z tych względów badacze poszukują nowych peptydów o potencjalnie istotnych funkcjach, co jednak jest bardzo czaso- i kosztochłonne w warunkach laboratoryjnych. Dlatego …

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• Nov. 9, 2022, 10:15 a.m.
  Ewa Szczurek (MIM UW)
  mock ERC interview (Deep optimized generation methods and models for antimicrobial peptide discovery)
  

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• Oct. 26, 2022, 10:15 a.m.
  Martin Vingron (Max Planck Institute for Molecular Genetics)
  "Association Plots" and joint clustering and embedding of genes and cells
  Single-cell transcriptome analysis poses many problems in visualizing and analyzing data. Based on the geometric interpretation of correspondence analysis biplots we define "Association Plots" to depict genes that characterize ("are associated with") a cluster of …

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• Oct. 19, 2022, 10:15 a.m.
  Jakub Karasiński; Piotr Radziński (CNBCh UW; MIM UW)
  Ideas on the isotope ratio measurements by MC-ICP-MS: Elimination of isotope standard
  

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• Oct. 12, 2022, 10:15 a.m.
  Grzegorz Skoraczyński (MIM UW)
  Alignstein: optimal transport and retention time alignment
  

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• Oct. 5, 2022, 10:15 a.m.
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  Organizational meeting
  

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• June 15, 2022, 10:15 a.m.
  Norbert Dojer (MIM UW)
  Cross-correlation analysis of optical mapping data
  

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