Seminar Computational Biology and Bioinformatics

Organizers

• prof. dr hab. Anna Gambin
• dr Aleksander Jankowski
• dr hab. Bartosz Wilczyński, prof. ucz.

Information

Home page

Research fields

• Computational Biology and Bioinformatics

List of talks

• April 9, 2025, 10:15 a.m.
  Kazimierz Oksza-Orzechowski (MIM UW)
  FACTMx: flexible multimodal autoencoding
  

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• March 26, 2025, 10:15 a.m.
  Sebastian Deorowicz (Silesian University of Technology)
  Ultrafast and accurate sequence alignment and clustering of viral genomes
  Viromics produces millions of viral genomes and fragments annually, overwhelming traditional sequence comparison methods. We introduce Vclust, an approach that determines average nucleotide identity by Lempel-Ziv parsing and clusters viral genomes with thresholds endorsed by …

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• March 12, 2025, 10:15 a.m.
  Krzysztof Koras (MIM UW)
  Drug-target interaction prediction with deep multi-modal contrastive learning
  

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• March 5, 2025, 10:15 a.m.
  Boštjan Gabrovšek (University of Ljubljana)
  Topological invariants of bonded knots and applications to protein entanglement
  

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• Feb. 26, 2025, 10:15 a.m.
  Eugene Baulin (IMol PAS)
  Revisiting the base pair maximization approach for RNA secondary structure prediction with SQUARNA
  

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• Jan. 22, 2025, 10:15 a.m.
  Bartek Wilczyński (MIM UW)
  Recent developments in deep learning approaches to enhancer prediction and design – a literature review
  

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• Jan. 15, 2025, 10:15 a.m.
  Paweł Górecki (MIM UW)
  Cophenetic distances in near-linear time
  

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• Jan. 8, 2025, 10:15 a.m.
  Barbara Wagner, Aleksandra Towarek, Barbara Domżał (CNBCh UW and MIM UW)
  Investigating the Constitution of 3 May Using LA-ICP-MS and Neural Networks
  

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• Dec. 18, 2024, 10:15 a.m.
  Małgorzata Łazęcka (MIM UW)
  Factor Analysis with Correlated Topic Model for Multimodal Data Integration
  

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• Dec. 4, 2024, 10:15 a.m.
  Jakub Zarzycki (IDEAS NCBR and MIM UW)
  pbn-STAC: Deep Reinforcement Learning-based Framework for Cellular Reprogramming
  

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• Nov. 27, 2024, 10:15 a.m.
  Irina Tuszyńska (Molecure)
  Computational methods supporting the drug design process at Molecure
  

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• Nov. 20, 2024, 10:15 a.m.
  Tomasz W. Turowski (Institute of Biochemistry and Biophysics PAS)
  Model of immobilized RNA polymerase
  

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• Nov. 13, 2024, 10:15 a.m.
  Justyna Król (MIM UW)
  Sliced-Wasserstein Flows: Nonparametric Generative Modeling via Optimal Transport and Diffusions
  

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• Nov. 6, 2024, 10:15 a.m.
  Adam Cicherski (MIM UW)
  Alignment Free Algorithm for Pangenome Graph Construction
  

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• Oct. 23, 2024, 10:15 a.m.
  Ada Hryniewicka (MIM UW and Molecure)
  Autoencoders for representing RNA fragments
  

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