Publications

Norbert Dojer

Number of publications: 27

2024

• Adam Cicherski, Anna Lisiecka , Norbert Dojer , AlfaPang: Alignment Free Algorithm for Pangenome Graph Construction, 24th International Workshop on Algorithms in Bioinformatics, London, the United Kingdom of Great Britain and Northern Ireland, 2 September 2024 - 4 September 2024. See in PBN

2023

• Adam Cicherski, Norbert Dojer , From de Bruijn Graphs to Variation Graphs – Relationships Between Pangenome Models, 30th International Symposium on String Processing and Information Retrieval, Pisa, Italy, 26 September 2023 - 28 September 2023. See in PBN

2021

• Anna Lisiecka , Norbert Dojer , Linearization of genome sequence graphs revisited, iScience, 24 (7) 2021, p. 102755:1 - 102755:14. See in PBN

2020

• Paulina Dziadkiewicz, Norbert Dojer , Getting insight into the pan-genome structure with PangTree, BMC Genomics, 21 2020, p. 274. See in PBN

2019

• Yingjie Zhu, Anna Biernacka, Benjamin Pardo, Norbert Dojer , Romain Forey, Magdalena Skrzypczak, Bernard Fongang, Jules Nde, Razie Yousefi, Philippe Pasero, Maga Rowicka, Krzysztof Ginalski, qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing, Nature Communications, 10 2019, p. 2313:1-2313:11. See in PBN

2018

• Thomas Clouaire, Vincent Rocher, Anahita Lashgari, Coline Arnould, Marion Aguirrebengoa, Anna Biernacka, Magdalena Skrzypczak, Franćcois Aymard, Bernard Fongang, Norbert Dojer , Jason Iacovoni, Maga Rowicka, Krzysztof Ginalski, Jacques Côté, Gaëlle Legube, Comprehensive mapping of histone modifications at DNA double-strand breaks deciphers repair pathway chromatin signatures, Molecular cell, 2018. See in PBN
• Michał Krzysztoń, Monika Zakrzewska-Płaczek, Norbert Dojer , Wojciech Karłowski, Joanna Kufel, Aleksandra Kwaśnik, Defective XRN3-mediated transcription termination in Arabidopsis affects the expression of protein-coding genes, Plant Journal, 93 (6) 2018, p. 1017-1031. See in PBN

2017

• Wei Shi, Therese Vu, Didier Boucher, Anna Biernacka, Jules Nde, Raj K. Pandita, Jasmin Straube, Glen M. Boyle, Fares Al-Ejeh, Purba Nag, Jessie Jeffery, Janelle L. Harris, Amanda L. Bain, Marta Monika Grzelak, Magdalena Skrzypczak, Abhishek Mitra, Norbert Dojer , Nicola Crosetto, Nicole Cloonan, Olivier J. Becherel, John Finnie, Jeffrey R. Skaar, Carl R. Walkley, Tej K. Pandita, Maga Rowicka, Krzysztof Ginalski, Steven W. Lane, Kum Kum Khanna, Ssb1 and Ssb2 cooperate to regulate mouse hematopoietic stem and progenitor cells by resolving replicative stress, Blood, 2017. See in PBN

2016

• Norbert Dojer , Learning Bayesian networks from datasets joining continuous and discrete variables, International Journal of Approximate Reasoning, 2016. See in PBN

2015

• Norbert Dojer , Piotr Jaroszyński, Efficient and Error-Tolerant Sequencing Read Mapping, Current Bioinformatics, 2015. See in PBN
• Norbert Dojer , MICHAŁ DĄBROWSKI, Bożena Kamińska, Izabella Krystkowiak, Bartosz Wilczyński , Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data, BMC Bioinformatics, 2015. See in PBN
• Krisztián Buza, Norbert Dojer , Bartosz Wilczyński , RECORD: Reference-Assisted Genome Assembly for Closely Related Genomes, 2015. See in PBN

2014

• Norbert Dojer , Michal Modzelewski, MSARC: Multiple sequence alignment by residue clustering, Algorithms for Molecular Biology, 2014. See in PBN

2013

• Allan R. Brasier, Norbert Dojer , Shuhua Fu, Abhishek Mitra, Maga Rowicka, Jun Yang, A probabilistic approach to learn chromatin architecture and accurate inference of the NF-kappa B/RelA regulatory network using ChIP-Seq, Nucleic Acids Research, 2013. See in PBN
• Paweł Bednarz, Norbert Dojer , Agnieszka Podsiadlo, Bartosz Wilczyński , BNFinder2: Faster Bayesian network learning and Bayesian classification, Bioinformatics, 2013. See in PBN
• Piotr Jaroszynski, Norbert Dojer , Efficient and Error-Tolerant Sequencing Read Mapping, INTERNATIONAL WORK-CONFERENCE ON BIOINFORMATICS AND BIOMEDICAL ENGINEERING 2013, 2013, p. 353-364. See in PBN
• Norbert Dojer , Michał Modzelewski, MSARC: Multiple Sequence Alignment by Residue Clustering, 2013. See in PBN
• Magda Bienko, Roberto Chiarle, Nicola Crosetto, Ivan Dikic, Norbert Dojer , Krzysztof Ginalski, Elif Karaca, Abhishek Mitra, Philippe Pasero, Maga Rowicka, Maria Joao Silva, Magdalena Skrzypczak, Qi Wang, Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing, NATURE METHODS, 2013. See in PBN

2011

• Przemysław Biecek , Norbert Dojer , Jerzy Tiuryn , Bi-Billboard: Symmetrization and Careful Choice of Informant Species Results in Higher Accuracy of Regulatory Element Prediction, Journal of Computational Biology, 2011. See in PBN

2010

• Norbert Dojer , An Efficient Algorithm for Learning Bayesian Networks from Data, Fundamenta Informaticae, 2010. See in PBN

2009

• Norbert Dojer , Bartosz Wilczyński , BNFinder: Exact and efficient method for learning Bayesian networks, Bioinformatics, 2009. See in PBN
• Norbert Dojer , Mateusz Patelak, Jerzy Tiuryn , Bartosz Wilczyński , Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs, BMC Bioinformatics, 2009. See in PBN

2006

• Norbert Dojer , Anna Gambin , A. Mizera, Jerzy Tiuryn , Bartosz Wilczyński , Applying Dynamic Bayesian Networks to Perturbed Gene Expression Data, BMC Bioinformatics, 2006. See in PBN
• Norbert Dojer , Learning Bayesian Networks Does Not Have to Be NP-Hard, Lecture Notes in Computer Science, 2006. See in PBN

2005

• Norbert Dojer , Clones of Modes, 2005. See in PBN

2004

• Norbert Dojer , A New Presentation of Existential Varieties, 2004. See in PBN
• Norbert Dojer , Applying term rewriting to partial algebra theory, Fundamenta Informaticae, 2004. See in PBN