Organizers

prof. dr hab. Anna Gambin
dr Aleksander Jankowski
dr hab. Bartosz Wilczyński, prof. ucz.

Information

Wednesdays, 10:15 a.m. , room: 3250

Home page

https://bioputer.mimuw.edu.pl/seminars/bob/

Research fields

Computational Biology and Bioinformatics

List of talks

June 14, 2023, 10:15 a.m.
Bartosz Ambroży Greń (CeNT UW)
Handcuffs and lassos in proteins in ideal polymers
In general proteins are open chains, but some of them have some kind of extra closure (e.g. cysteine bridge, isopeptide bond, metal ion bridge) which alters their topology. Because of these closures we can find …
June 7, 2023, 10:15 a.m.
Mohammad Saqib (Faculty of Chemistry, UW)
ML for Protein Secondary Structure Assignments
May 31, 2023, 10:15 a.m.
Torgeir R. Hvidsten (Norwegian University of Life Sciences)
A comparative regulomics method for studying gene regulatory evolution
May 24, 2023, 10:15 a.m.
Barbara Domżał (MIM UW)
Magnetstein: universal tool for complex mixture analysis in NMR spectroscopy
May 17, 2023, 10:15 a.m.
Konrad Łukaszyk (CeNT UW)
Deciphering single cells niche composition and their effect on hair follicle and dermal papillae Stem Cells regulation during the hair regeneration cycle
May 10, 2023, 10:15 a.m.
Marcin Wierzbiński (MIM UW)
HP) protein folding model with the Monte Carlo Method and A* algorith (Approaching the hydrophobic-polar)
The modeling of protein folding, a biological issue, is particularly intriguing. The deterministic solution of the so-called hydrophobic-polar (HP) protein folding model is one such problem. It turns out that the Monte Carlo methods used …
April 26, 2023, 10:15 a.m.
Kazimierz Oksza-Orzechowski (MIM UW)
CaClust: mapping cells to the clonal structure in Follicular Lymphoma
April 19, 2023, 10:15 a.m.
Senbai Kang (MIM UW)
DelSIEVE: joint inference of single-nucleotide variants, deletions, and cell phylogeny from single-cell DNA sequencing data
April 12, 2023, 10:15 a.m.
Jan Poleszczuk (Institute of Biocybernetics and Biomedical Engineering PAS and Maria Sklodowska-Curie National Research Institute of Oncology)
AI/ML in Polish healthcare system: current opportunities and challenges
April 5, 2023, 10:15 a.m.
Karol Wróblewski (CNBCh UW)
CABS-flex as a de novo structure prediction tool for cyclic peptides
Cyclic peptides have become an attractive class of molecules in drug design due to their diverse biological activities and increased stability. However, their design and synthesis can be challenging due to their complex three-dimensional structures. …
March 29, 2023, 10:15 a.m.
Teresa Przytycka (National Library of Medicine/National Institutes of Health)
Delineating interactions between mutational signatures, cellular processes, and environment through computational approaches
Cancer genomes accumulate many somatic mutations resulting from carcinogenic exposures, cancer-related aberrations of DNA maintenance machinery, and normal stochastic events. These processes often lead to distinctive patterns of mutations, called mutational signatures. However interpreting mutation …
March 22, 2023, 10:15 a.m.
Andrzej Mizera (MIM UW)
Divide & Control: An Efficient Decomposition-based Approach Towards the Control of Asynchronous Boolean Networks
March 15, 2023, 10:15 a.m.
Magda Markowska (MIM UW)
CONSET: joint copy number and single nucleotide variant event tree model of evolutionary tumor history for single-cell data
March 8, 2023, 10:15 a.m.
Stanisław Jastrzębski (Molecule.one)
On the Implications of the Simplicity Bias in Deep Nets for the “AI Scientist”: The Good, The Bad, and The Ugly
March 1, 2023, 10:15 a.m.
Magdalena Machnicka (MIM UW)
Analysis of trans-homolog chromatin interactions based on Hi-C data