Seminar Computational Biology and Bioinformatics

Organizers

• prof. dr hab. Anna Gambin
• dr Aleksander Jankowski
• dr hab. Bartosz Wilczyński, prof. ucz.

Information

Home page

Research fields

• Computational Biology and Bioinformatics

List of talks

• Jan. 14, 2026, 10:15 a.m.
  Norbert Dojer (MIM UW)
  Comparison and transformation of pangenome graphs
  

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• Jan. 7, 2026, 10:15 a.m.
  Joanna Krawczyk (Ingenix.ai)
  Biology in the era of Foundational Models
  

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• Dec. 17, 2025, 10:15 a.m.
  Jan Olszewski (MIM UW)
  MATTS atom types and their use case in analyzing representations of deep neural networks
  

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• Dec. 10, 2025, 10:15 a.m.
  Simone Ciccolella (University of Milano-Bicocca)
  Modelling and combinatorial approaches for Pangenomics
  

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• Dec. 3, 2025, 10:15 a.m.
  Brendonas Stakauskas (Vilnius University)
  Use of Protein Language Models for Phylogenetic Analysis
  

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• Nov. 26, 2025, 10:15 a.m.
  Nicolaas Van Renne (Brussels University Hospital)
  A multi-omics analysis of advanced Triple-Negative Breast Cancer identifies predictors to chemo-immunotherapy and on-treatment dynamics
  

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• Nov. 19, 2025, 10:15 a.m.
  Marcin Możejko (MIM UW)
  PepCompass: Navigating peptide embedding spaces using Riemannian geometry
  

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• Nov. 12, 2025, 10:15 a.m.
  Diego Marques Coelho (Ryvu Therapeutics and Federal University of Rio Grande do Norte)
  Building and breaking bridges in scRNAseq networks
  

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• Nov. 5, 2025, 10:15 a.m.
  Michał Krzysztoń (Institute of Biochemistry and Biophysics PAS)
  Mind the gap – Pol II transcription between seed maturation and germination
  

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• Oct. 29, 2025, 10:15 a.m.
  Martyna Molak (CeNT UW)
  Archeo- and palaeogenomics. Bioinformatic challenges in investigating the past using DNA.
  

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• Oct. 22, 2025, 10:15 a.m.
  Adam Cicherski (MIM UW)
  From k-mers to Suffix Arrays: Almost Linear-Time Construction of Reference-free Pangenome Graphs
  

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• Oct. 15, 2025, 10:15 a.m.
  Eugene Baulin, Maksim Serdakov (IMol PAS)
  Identifying GNRA tetraloop motifs in RNA 3D structures and in sequences
  

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• Oct. 8, 2025, 10:15 a.m.
  BOB seminar organizers
  Organizational meeting
  

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• June 11, 2025, 10:15 a.m.
  Łucja Kowalewska; Szymon Nowakowski (Faculty of Biology, UW; MIM UW and Center4ML, Faculty of Physics, UW)
  Automated Recognition of Membrane Nanostructural Assemblies: Neural Networks Meet Electron Microscopy
  

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• June 4, 2025, 10:15 a.m.
  Marcin Możejko (MIM UW)
  Discovering Clinically Relevant Cellular Neighborhoods Using Cellohood
  

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