Publications

Jarosław Paszek

Number of publications: 18

2024

• Paweł Górecki , Natalia Rutecka, Agnieszka Mykowiecka, Jarosław Paszek , Unifying duplication episode clustering and gene-species mapping inference, Algorithms for Molecular Biology, 19 (1) 2024, p. 1-20. See in PBN

2023

• Paweł Górecki , Natalia Rutecka, Agnieszka Mykowiecka, Jarosław Paszek , Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings, Workshop on Algorithms in Bioinformatics 2023, Houston, the United States of America, 4 September 2023 - 6 September 2023. See in PBN

2021

• Jarosław Paszek , Oliver Eulenstein, Paweł Górecki , Novel genomic duplication models through integer linear programming, 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, Virtual on-line, the United States of America, 1 August 2021 - 4 August 2021. See in PBN
• Jarosław Paszek , Alexey Markin, Oliver Eulenstein, Paweł Górecki , Taming the Duplication-Loss-Coalescence Model with Integer Linear Programming, Journal of Computational Biology, 28 (8) 2021, p. 758-773. See in PBN

2020

• Jarosław Paszek , Jerzy Tiuryn , Paweł Górecki , Minimizing genomic duplication episodes, Computational Biology and Chemistry, 89 2020, p. 107260. See in PBN

2019

• Paweł Górecki , Agnieszka Mykowiecka, Jarosław Paszek , Oliver Eulenstein, Mathematical properties of the gene duplication cost, Discrete Applied Mathematics, 258 2019, p. 114-122. See in PBN

2018

• Paweł Górecki , Jarosław Paszek , Efficient algorithms for genomic duplication models, IEEE-ACM Transactions on Computational Biology and Bioinformatics, 15 (5) 2018, p. 1515-1524. See in PBN
• Paweł Górecki , Jarosław Paszek , Inferring duplication episodes from unrooted gene trees, BMC Genomics, 19 (5) 2018, p. 71-95. See in PBN

2017

• Paweł Górecki , Jarosław Paszek , New Algorithms for the Genomic Duplication Problem, Lecture Notes in Computer Science, RECOMB International Workshop on Comparative Genomics, Barcelona, Spain, 10562 2017, p. 101-115. See in PBN
• Paweł Górecki , Alexey Markin, Agnieszka Mykowiecka, Jarosław Paszek , Oliver Eulenstein, Phylogenetic Tree Reconciliation: Mean Values for Fixed Gene Trees, 13th International Symposium on Bioinformatics Research and Applications, Honolulu, the United States of America, 30 May 2017 - 2 June 2017. See in PBN
• Paweł Górecki , Jarosław Paszek , Oliver Eulenstein, Unconstrained Diameters for Deep Coalescence, IEEE-ACM Transactions on Computational Biology and Bioinformatics, 14 (5) 2017, p. 1002-1012. See in PBN

2016

• Paweł Górecki , Jarosław Paszek , Genomic duplication problems for unrooted gene trees, BMC Genomics, 2016. See in PBN
• Paweł Górecki , Jarosław Paszek , Agnieszka Mykowiecka, Mean Values of Gene Duplication and Loss Cost Functions, Lecture Notes in Computer Science, International Symposium on Bioinformatics Research and Applications, 5 June 2016 - 8 June 2016. See in PBN

2014

• Paweł Górecki , Jarosław Paszek , Eulenstein Oliver, Duplication Cost Diameters, Lecture Notes in Computer Science, International Symposium on Bioinformatics Research and Applications, China, 2014. See in PBN
• Paweł Górecki , Jarosław Paszek , Oliver Eulenstein, Unconstrained Gene Tree Diameters for Deep Coalescence, ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, the United States of America, 2014. See in PBN

2013

• Anna Gambin , Jarosław Paszek , Michał Startek , Tomasz Gambin, Dariusz Grzebelus, Krzysztof Walczak, TIRfinder: A Web Tool for Mining Class II Transposons Carrying Terminal Inverted Repeats, Evolutionary Bioinformatics, 9 2013, p. 17-27. See in PBN

2005

• Andrzej Huczko, Hubert Lange, Jarosław Paszek , Michał Bystrzejewski, Stanisław Cudziło, S Gachet, M Monthioux, Y. Q. Zhu, H. W. Kroto, D. R. M. Walton, A Simple Route to New 1D Nanostructures, Intelligence in a Small Materials World. Selected Papers from IPMM-2003 The Fourth International Conference on Intelligent Processing and Manufacturing of Materials, 2005. See in PBN

Others

• Jarosław Paszek , Paweł Górecki , New Algorithms for the Genomic Duplication Problem, Comparative Genomics: 15th International Workshop, RECOMB CG 2017, Barcelona, Spain, October 4-6, 2017, Proceedings, , p. 101-115. See in PBN