Publications

Aleksander Jankowski

Number of publications: 12

2023

• Tim Pollex, Raquel Marco-Ferreres, Lucia Ciglar, Yad Ghavi-Helm, Adam Rabinowitz, Rebecca Rodriguez Viales, Christoph Schaub, Aleksander Jankowski , Charles Girardot, Eileen E.M. Furlong, Chromatin gene-gene loops support the cross-regulation of genes with related function, Molecular cell, 2023, p. 1-26. See in PBN
• Giriram Mohana, Julien Dorier, Xiao Li, Marion Mouginot, Rebecca C. Smith, Héléna Malek, Marion Leleu, Daniel Rodriguez, Jenisha Khadka, Patrycja Rosa , Pascal Cousin, Christian Iseli, Simon Restrepo, Nicolas Guex, Brian D. McCabe, Aleksander Jankowski , Michael S. Levine, Maria Cristina Gambetta, Chromosome-level organization of the regulatory genome in the Drosophila nervous system, CELL, 186 (18) 2023, p. 3826-3844.e26. See in PBN

2022

• Jacob W. P. Potuijt, Anna Sowińska-Seidler, Ewelina Bukowska-Olech, Picard Nguyen, Aleksander Jankowski , Frank Magielsen, Karolina Matuszewska, Christianne A. van Nieuwenhoven, Robert-Jan H. Galjaard, Annelies de Klein, Aleksander Jamsheer, The pZRS non-coding regulatory mutation resulting in triphalangeal thumb–polysyndactyly syndrome changes the pattern of local interactions, MOLECULAR GENETICS AND GENOMICS, 297 (5) 2022, p. 1343-1352. See in PBN

2019

• Yad Ghavi-Helm, Aleksander Jankowski , Sascha Meiers, Rebecca R. Viales, Jan O. Korbel, Eileen E. M. Furlong, Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression, NATURE GENETICS, 51 (8) 2019, p. 1272-1282. See in PBN

2018

• Xuecong Wang, Yogesh Srivastava, Aleksander Jankowski , Vikas Malik, Yuanjie Wei, Ricardo CH del Rosario, Vlad Cojocaru, Shyam Prabhakar, Ralf Jauch, DNA-mediated dimerization on a compact sequence signature controls enhancer engagement and regulation by FOXA1, Nucleic Acids Research, 46 (11) 2018, p. 5470–5486. See in PBN

2016

• Aleksander Jankowski , Paulina Obara, Utsav Mathur, Jerzy Tiuryn , Enhanceosome transcription factors preferentially dimerize with high mobility group proteins, BMC Systems Biology, 10 2016, p. 14. See in PBN
• Aleksander Jankowski , Jerzy Tiuryn , Shyam Prabhakar, Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data, Bioinformatics, 32 (16) 2016, p. 2419–2426. See in PBN

2015

• Yong-Heng Huang, Aleksander Jankowski , Kathryn S. E. Cheah, Shyam Prabhakar, Ralf Jauch, SOXE transcription factors form selective dimers on non-compact DNA motifs through multifaceted interactions between dimerization and high-mobility group domains, Scientific Reports, 5 2015, p. 10398. See in PBN

2014

• Aleksander Jankowski , Shyam Prabhakar, Jerzy Tiuryn , TACO: a general-purpose tool for predicting cell-type–specific transcription factor dimers, BMC Genomics, 15 2014, p. 208. See in PBN

2013

• Aleksander Jankowski , Ewa Szczurek , Ralf Jauch, Jerzy Tiuryn , Shyam Prabhakar, Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers, Genome Research, 23 (8) 2013, p. 1307-1318. See in PBN

2010

• Miron Kursa, Aleksander Jankowski , Witold Rudnicki, Boruta – A System for Feature Selection, Fundamenta Informaticae, 101 (4) 2010, p. 271–285. See in PBN

2009

• Witold Rudnicki, Aleksander Jankowski , Aleksander Modzelewski, Aleksander Piotrowski, Adam Zadrożny, The new SIMD implementation of the Smith-Waterman algorithm on Cell microprocessor, Fundamenta Informaticae, 96 (1-2) 2009, p. 181–194. See in PBN