Publications

Michał Startek

Number of publications: 22

2025

• Antoni Moszyński, Antoni Goldstein, Barbara Domżał, Michał Startek , Krzysztof Kazimierczuk, Anna Gambin , Magnetstein: Web application for quantitative NMR mixture analysis, SoftwareX, 31 2025, p. 102329. See in PBN
• Michał Aleksander Ciach, Grzegorz Skoraczyński, Szymon Majewski, Dirk Valkenborg, Michał Startek , Anna Gambin , Błażej Miasojedow , Masserstein: Linear regression of mass spectra by optimal transport, Rapid Communications in Mass Spectrometry, 39 (S1) 2025. See in PBN

2024

• Piotr Prostko , Piotr Radziński , Michał Ciach, Youzhong Liu, Michał Startek , Frederik Lermyte, Thomas De Vijlder, Anna Gambin , Simon Appeltans, Dirk Valkenborg, MIND4OLIGOS: Determining the Monoisotopic Mass of Oligonucleotides Observed in High-Resolution Mass Spectrometry, Analytical Chemistry, 96 (23) 2024, p. 9343-9352. See in PBN
• Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Startek , Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd M. H. Dijkstra, Yasset Perez-Riverol, Hannes Röst, Oliver Kohlbacher, Timo Sachsenberg, OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data, Nature Methods, 21 (3) 2024, p. 365-367. See in PBN

2022

• Piotr Radziński , Dirk Valkenborg, Michał Startek , Anna Gambin , Envemind: Accurate Monoisotopic Mass Determination Based On Isotopic Envelope, Journal of the American Society for Mass Spectrometry, 33 (11) 2022, p. 2063-2069. See in PBN

2021

• Mateusz K. Łącki, Michał Startek , Sven Brehmer, Ute Distler, Stefan Tenzer, OpenTIMS, TimsPy, and TimsR: Open and Easy Access to timsTOF Raw Data, Journal of Proteome Research, 20 (4) 2021, p. 2122-2129. See in PBN

2020

• Piotr Dittwald, Ewa Gajewska, Bartosz Grzybowski, Jacek Młynarski, Oskar Popik, Michał Startek , Sara Szymkuć, Algorithmic Discovery of Tactical Combinations for Advanced Organic Syntheses, Chem, 6 (1) 2020, p. 280-293. See in PBN
• Mateusz K. Łącki, Dirk Valkenborg, Michał Startek , IsoSpec2: Ultrafast Fine Structure Calculator, Analytical Chemistry, 92 (14) 2020, p. 9472-9475. See in PBN

2019

• Neo Christopher Chung , Błażej Miasojedow , Michał Startek , Anna Gambin , Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data, BMC Bioinformatics, 20 (S15) 2019, p. 1-11. See in PBN
• Mateusz Krzysztof Łącki, Frederik Lermyte, Błażej Miasojedow , Michał Startek , Frank Sobott, Dirk Valkenborg, Anna Gambin , masstodon: A tool for assigning peaks and modeling electron transfer reactions in top-down mass spectrometry, Analytical Chemistry, 91 (3) 2019, p. 1801-1807. See in PBN

2018

• Yubai Zhou, Alexei Toutchkine, Lindsey Rickershauser, Gregory J. Kirkovits, Michael P. McCormack, Milan Mrksich, Sarah L. J. Trice, Michał Startek , Manishabrata Bhowmick, Heather Lima, Karol Molga, Piotr Dittwald, Ariel Adamski, Bartosz Grzybowski, Tomasz Klucznik, Barbara Mikulak-Klucznik, Sara Szymkuć, Ewa Gajewska, Rafał Roszak, Bianka Sieredzińska, Efficient Syntheses of Diverse, Medicinally Relevant Targets Planned by Computer and Executed in the Laboratory, Chem, 4 (3) 2018, p. P522-532. See in PBN
• Michał Aleksander Ciach, Anna Gambin , Szymon Majewski, Błażej Miasojedow , Wanda Niemyska , Michał Startek , The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra with Application to Spectral Deconvolution, 18th Workshop on Algorithms in Bioinformatics, Helsinki, Finland, 20 August 2018 - 22 August 2018. See in PBN

2017

• Michał Startek , Jakub Nogły, Dariusz Grzebelus, Anna Gambin , Agnieszka Gromadka, Inferring transposons activity chronology by TRANScendence - TEs database and de-novo mining tool, BMC Bioinformatics, 18 (suppl. 12) 2017, p. 57-66. See in PBN
• Mateusz K Łącki, Michał Startek , Dirk Valkenborg, Anna Gambin , IsoSpec: Hyperfast Fine Structure Calculator, Analytical Chemistry, 89 (6) 2017, p. 3272–3277. See in PBN

2016

• Michał Startek , Michał Bajczyk, Piotr Dittwald, Ewa P. Gajewska, Bartosz A. Grzybowski, Tomasz Klucznik, Karol Molga, Sara Szymkuć, Computer-Assisted Synthetic Planning: The End of the Beginning, ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 55 (20) 2016, p. 5904-5937. See in PBN

2015

• Ian M. Campbell, Anna Gambin , Tomasz Gambin, Patricia Hixson, Chad A. Shaw, Paweł Stankiewicz, Michał Startek , Przemyslaw Szafranski, Genome-wide analyses of LINE–LINE-mediated nonallelic homologous recombination, Nucleic Acids Research, 2015. See in PBN
• Anna Gambin , Dariusz Grzebelus, Michał Startek , Krzysztof Stawujak, MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula, Genetica, 2015. See in PBN

2013

• Anna Gambin , Przemyslaw Szafranski, Paweł Stankiewicz, Michał Startek , Marta Smyk, Chromosome conformation capture-on-chip analysis of long-range cis-interactions of the SOX9 promoter, Chromosome Research, 2013. See in PBN
• Pierre Capy, Anna Gambin , Dariusz Grzebelus, Arnaud Le Rouzic, Michał Startek , Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations, Theoretical Population Biology, 90 (Complete) 2013, p. 145-151. See in PBN
• Anna Gambin , Jarosław Paszek , Michał Startek , Tomasz Gambin, Dariusz Grzebelus, Krzysztof Walczak, TIRfinder: A Web Tool for Mining Class II Transposons Carrying Terminal Inverted Repeats, Evolutionary Bioinformatics, 9 2013, p. 17-27. See in PBN

2012

• Gregory Kucherov, Sławomir Lasota , Laurent Noe, Adam Bułak, Anna Gambin , Maciej Sykulski, Michał Startek , Efficient alternatives to PSI-BLAST, Bulletin of the Polish Academy of Sciences: Technical Sciences, 2012. See in PBN

2011

• Anna Gambin , Gregory Kucherov, Sławomir Lasota , Laurent Noe, Michał Startek , Maciej Sykulski, Subset seed extension to protein BLAST, Proc. Int. Conf. on Bioinformatics Models, Methods and Algorithms Bioinformatics'11, 2011. See in PBN