Publications

Przemysław Biecek

Number of publications: 124

2024

• Hubert Baniecki, Przemysław Biecek , Adversarial attacks and defenses in explainable artificial intelligence: A survey, Information Fusion, 107 2024, p. 102303. See in PBN
• Sławomir Nowaczyk, Przemysław Biecek , Neo Christopher Chung , Mauro VALLATI, Paweł Skruch, Joanna Jaworek-Korjakowska, Simon PARKINSON, Alexandros NIKITAS, Artificial Intelligence. ECAI 2023 International Workshops. Part 2, 26th European Conference on Artificial Intelligence, Kraków, Poland, 29 September 2023 - 3 October 2023. See in PBN
• Stanisław Giziński, Paulina Kaczyńska, Hubert Ruczyński, Emilia Wiśnios, Bartosz Pieliński, Przemysław Biecek , Julian Sienkiewicz, Big Tech influence over AI research revisited: Memetic analysis of attribution of ideas to affiliation, Journal of Informetrics, 18 (4) 2024, p. 101572. See in PBN
• Hubert Baniecki, Giuseppe Casalicchio, Bernd Bischl, Przemysław Biecek , On the Robustness of Global Feature Effect Explanations, Machine Learning and Knowledge Discovery in Databases. Research Track and Demo Track ECML PKDD 2024, Vilnius, Lithuania, 9 September 2024 - 13 September 2024. See in PBN
• Paulina Tomaszewska, Przemysław Biecek , Position: Do Not Explain Vision Models Without Context, 41st International Conference on Machine Learning, Vienna, Austria, 21 July 2024 - 27 July 2024. See in PBN
• Przemysław Biecek , Wojciech Samek, Position: Explain to Question not to Justify, 41st International Conference on Machine Learning, Vienna, Austria, 21 July 2024 - 27 July 2024. See in PBN
• Bartlomiej Sobieski, Maciej Kwiatkowski, Jakub Szulc, Hubert Baniecki, Przemysław Biecek , Krzysztof Jankowski, Michał Janik, Red-Teaming Segment Anything Model, The IEEE/CVF Conference on Computer Vision and Pattern Recognition 2024, Seattle, the United States of America, 17 June 2024 - 21 June 2024, 33 2024, p. 2947-2956. See in PBN
• Piotr Wilczyński, Wiktoria Mieleszczenko-Kowszewicz, Przemysław Biecek , Resistance Against Manipulative AI: Key Factors and Possible Actions, 27th European Conference on Artificial Intelligence, Santiago de Compostela, Spain, 19 October 2024 - 24 October 2024. See in PBN

2023

• Anna Michalska-Falkowska, Jacek Niklinski, Hartmut Juhl, Anetta Sulewska, Joanna Kisluk, Radoslaw Charkiewicz, Michal Ciborowski, Rodryg Ramlau, Robert Gryczka, Cezary Piwkowski, Miroslaw Kozlowski, Borys Miskiewicz, Przemysław Biecek , Karolina Wnorowska, Zofia Dzieciol-Anikiej, Karine Sargsyan, Wojciech Naumnik, Robert Mroz, Joanna Reszec-Gielazyn, Applied Molecular-Based Quality Control of Biobanked Samples for Multi-Omics Approach, Cancers, 15 (14) 2023, p. 3742. See in PBN
• Katarzyna Woźnica, Mateusz Grzyb, Zuzanna Trafas, Przemysław Biecek , Consolidated learning: a domain-specific model-free optimization strategy with validation on metaMIMIC benchmarks, Machine Learning, 2023. See in PBN
• Alistair Knott, Dino Pedreschi, Raja Chatila, Tapabrata Chakraborti, Susan Leavy, Ricardo Baeza-Yates, David Eyers, Andrew Trotman, Paul D. Teal, Przemysław Biecek , Stuart Russell, Yoshua Bengio, Generative AI models should include detection mechanisms as a condition for public release, Ethics and Information Technology, 25 (4) 2023. See in PBN
• Irena Koprinska, Paolo Mignone, Riccardo Guidotti, Szymon Jaroszewicz, Holger Fröning, Francesco Gullo, Pedro M. Ferreira, Damian Roqueiro, Gaia Ceddia, Slawomir Nowaczyk, João Gama, Rita Ribeiro, Ricard Gavaldà, Elio Masciari, Zbigniew Ras, Ettore Ritacco, Francesca Naretto, Andreas Theissler, Przemysław Biecek , Wouter Verbeke, Gregor Schiele, Franz Pernkopf, Michaela Blott, Ilaria Bordino, Ivan Luciano Danesi, Giovanni Ponti, Lorenzo Severini, Annalisa Appice, Giuseppina Andresini, Ibéria Medeiros, Guilherme Graça, Lee Cooper, Naghmeh Ghazaleh, Jonas Richiardi, Diego Saldana, Konstantinos Sechidis, Arif Canakoglu, Sara Pido, Pietro Pinoli, Albert Bifet, Sepideh Pashami, Zbigniew Raś, Machine Learning and Principles and Practice of Knowledge Discovery in Databases: International Workshops of ECML PKDD 2022, Grenoble, France, September 19–23, 2022, Proceedings, Part I, European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, Grenoble, France, 19 September 2022 - 23 March 2023. See in PBN
• Margarita Dobrzycka, Anetta Sulewska, Przemysław Biecek , Radoslaw Charkiewicz, Piotr Karabowicz, Angelika Charkiewicz, Kinga Golaszewska, Patrycja Milewska, Anna Michalska-Falkowska, Karolina Nowak, Jacek Niklinski, Joanna Konopińska, miRNA Studies in Glaucoma: A Comprehensive Review of Current Knowledge and Future Perspectives, International Journal of Molecular Sciences, 24 (19) 2023, p. 14699. See in PBN
• Mikołaj Spytek, Mateusz Krzyziński, Sophie Hanna Langbein, Hubert Baniecki, Marvin N Wright, Przemysław Biecek , survex: an R package for explaining machine learning survival models, Bioinformatics, 39 (12) 2023. See in PBN
• Mateusz Krzyziński, Mikołaj Spytek, Hubert Baniecki, Przemysław Biecek , SurvSHAP(t): Time-dependent explanations of machine learning survival models, Knowledge-Based Systems, 262 2023, p. 110234. See in PBN
• Hubert Baniecki, Dariusz Parzych, Przemysław Biecek , The grammar of interactive explanatory model analysis, Data Mining and Knowledge Discovery, 2023. See in PBN
• Piotr Komorowski, Hubert Baniecki, Przemysław Biecek , Towards Evaluating Explanations of Vision Transformers for Medical Imaging, IEEE/CVF Conference on Computer Vision and Pattern Recognition 2023 Workshops, Vancouver, Canada, 18 June 2023 - 22 June 2023. See in PBN

2022

• Angela Lombardi, Domenico Diacono, Nicola Amoroso, Przemysław Biecek , Alfonso Monaco, Loredana Bellantuono, Ester Pantaleo, Giancarlo Logroscino, Roberto De Blasi, Sabina Tangaro, Roberto Bellotti, A robust framework to investigate the reliability and stability of explainable artificial intelligence markers of Mild Cognitive Impairment and Alzheimer’s Disease, Brain Informatics, 9 (1) 2022. See in PBN
• Joanna Drozd-Sokołowska, Anna Waszczuk-Gajda, Magdalena Witkowska, Elżbieta Sienkiewicz, Anna Kopińska, Agnieszka Kołkowska-Leśniak, Joanna Barankiewicz, Monika Długosz-Danecka, Piotr Smolewski, Grzegorz Helbig, Ewa Lech-Marańda, Wojciech Jurczak, Przemysław Biecek , Sebastian Giebel, Wiesław Wiktor-Jędrzejczak, Grzegorz Basak, Bing-Neel Syndrome, a Rare Presentation of Waldenström Macroglobulinemia—A Multicenter Report by the Polish Lymphoma Research Group, Journal of Clinical Medicine, 11 (15) 2022, p. 1-12. See in PBN
• Przemysław Biecek , Jakub Wiśniewski, fairmodels: a Flexible Tool for Bias Detection, Visualization, and Mitigation in Binary Classification Models, R Journal, 14 (1) 2022, p. 227-243. See in PBN
• Weronika Hryniewska, Adrianna Grudzień, Przemysław Biecek , LIMEcraft: handcrafted superpixel selection and inspection for Visual eXplanations, Machine Learning, 2022. See in PBN
• Bastian Pfeifer, Hubert Baniecki, Anna Saranti, Przemysław Biecek , Andreas Holzinger, Multi-omics disease module detection with an explainable Greedy Decision Forest, Scientific Reports, 12 (1) 2022. See in PBN
• Nuno Sepúlveda, João Malato, Franziska Sotzny, Anna D. Grabowska, André Fonseca, Clara Cordeiro, Luís Graça, Przemysław Biecek , Uta Behrends, Josef Mautner, Francisco Westermeier, Eliana M. Lacerda, Carmen Scheibenbogen, Revisiting IgG Antibody Reactivity to Epstein-Barr Virus in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome and Its Potential Application to Disease Diagnosis, Frontiers in Medicine, 9 2022. See in PBN
• Wojciech Jaworski, Przemysław Biecek , Adam Dobrakowski, Małgorzata Marciniak, Agnieszka Mykowiecka, Agnieszka Morusiewicz, Joanna Przetacka, Łukasz Kamiński, Supporting Doctor’s Decisions Based on Electronic Medical Documentation in Polish, 18th World Congress of Medical and Health Informatics, Virtual Event, Germany, 2 October 2021 - 4 October 2021. See in PBN

2021

• Johannes Bracher, Daniel Wolffram, Jannik Deuschel, Konstantin Görgen, Jakob Ketterer, Alexander Ullrich, Sam Abbott, Maria Vittoria Barbarossa, Dimitris Bertsimas, Sangeeta Bhatia, MARCIN BODYCH, Nikos I. Bosse, Jan Pablo Burgard, Lauren Castro, Geoffrey Fairchild, Jan Fuhrmann, Sebastian Funk, Krzysztof Gogolewski , Quanquan Gu, Stefan Heyder, Thomas Hotz, Yuri Kheifetz, Holger Kirsten, Ekaterina Krymova, Michael Lingzhi Li, Jan H. Meinke, Isaac J. Michaud, Karol Niedzielewski, Tomasz Ożański, Franciszek Rakowski, Markus Scholz, Saksham Soni, Ajitesh Srivastava, Jakub Zieliński, Difan Zou, Tilmann Gneiting, Melanie Schienle, Hamza Tazi Bouardi, Omar Skali Lami, Łukasz Górski , Magdalena Gruziel-Słomka, Artur Kaczorek, Antoni Moszyński, Jedrzej Nowosielski, Maciej Radwan, Marcin Semeniuk, Rafał Bartczuk, Jan Kisielewski, Przemysław Biecek , VIKTOR BEZBORODOV, Dave A. Osthus, Anna Gambin , Błażej Miasojedow , Ewa Szczurek , Daniel Rabczenko, Magdalena Rosińska, Barbara Pabjan, EWARYST RAFAJŁOWICZ, EWA SKUBALSKA-RAFAJŁOWICZ, WOJCIECH RAFAJŁOWICZ, Agata Migalska, Antoine Flahault, Elisa Manetti, Christine Choirat, Benjamín Béjar Haro, Gavin Lee, Guillaume Obozinski, Tao Sun, Dorina Thanou, Pan Xu, Jinghui Chen, Lingxiao Wang, Weitong Zhang, Viktor K. Prasanna, Frost Tianjian Xu, MAREK BAWIEC, TYLL KRÜGER, A pre-registered short-term forecasting study of COVID-19 in Germany and Poland during the second wave, Nature Communications, vol. 12 (art. 5173) 2021, p. 1-16. See in PBN
• Przemysław Biecek , Hubert Baniecki, Wojciech Kretowicz, Piotr Piatyszek, Jakub Wiśniewski, dalex: Responsible Machine Learning with Interactive Explainability and Fairness in Python, JOURNAL OF MACHINE LEARNING RESEARCH, 22 2021, p. 1-7. See in PBN
• Przemysław Biecek , Tomasz Burzykowski, Explanatory Model Analysis - Explore, Explain, and Examine Predictive Models, 2021. See in PBN
• Adam Gabriel Dobrakowski, Agnieszka Mykowiecka, Małgorzata Marciniak, Wojciech Jaworski, Przemysław Biecek , Interpretable segmentation of medical free-text records based on word embeddings, Journal of Intelligent Information Systems, 57 (3) 2021, p. 447-465. See in PBN
• Tomasz Stanisławek, Filip Graliński, Anna Wróblewska, Dawid Lipiński, Agnieszka Kaliska, Bartosz Topolski, Przemysław Biecek , Paulina Rosalska, Kleister: Key Information Extraction Datasets Involving Long Documents with Complex Layouts, 16th International Conference on Document Analysis and Recognition, Lausanne, Switzerland, 4 September 2021 - 9 September 2021. See in PBN
• Jakob M.T. Moran, Piotr Donizy, Cheng-Lin Wu, Janusz Kopczynski, Malgorzata Pieniazek, Janusz Ryś, Mai P. Hoang, Przemysław Biecek , Large nuclear size correlated with better overall survival, Merkel cell polyomavirus positivity, and terminal deoxynucleotidyl transferase expression in Merkel cell carcinoma, Journal of the American Academy of Dermatology, 84 (2) 2021, p. 550-552. See in PBN
• Piotr Donizy, Joanna P. Wróblewska, Dora Dias-Santagata, Katarzyna Woznica, Przemysław Biecek , Mark C. Mochel, Cheng-Lin Wu, Janusz Kopczynski, Malgorzata Pieniazek, Janusz Ryś, Andrzej Marszalek, Mai P. Hoang, Merkel cell carcinoma of unknown primary: immunohistochemical and molecular analyses reveal distinct UV-signature/MCPyV-negative and high immunogenicity/MCPyV-positive profiles., Cancers, 13 (8) 2021, p. art. 1621 s. 1-14. See in PBN
• ANNA MARKIEWICZ, Piotr Donizy, MARTYNA ELAS, JOLANTA ORŁOWSKA-HEITZMANN, BOŻENA ROMANOWSKA-DIXON, Przemysław Biecek , Nuclear pseudoinclusions and intranuclear grooves have an important impact on the long-term survival of patients with uveal melanoma, Anticancer Research, 41 (1) 2021, p. 517-526. See in PBN
• Piotr Kupczyk, Aleksandra Simiczyjew, Jakub Marczuk, Ewelina Dratkiewicz, Artur Beberok, Jakub Rok, Malgorzata Pieniazek, Dmitry Nevozhay, Bartosz Slowikowski, Dorota Wrzesniok, Dorota Nowak, Piotr Donizy, Przemysław Biecek , Grzegorz Chodaczek, PARP1 as a marker of an aggressive clinical phenotype in cutaneous melanoma - a clinical and an in vitro study., Cells, 10 (2) 2021, p. art. 286 s. 1-21. See in PBN
• Michael Bücker, Gero Szepannek, Alicja Gosiewska, Przemysław Biecek , Transparency, auditability, and explainability of machine learning models in credit scoring, Journal of the Operational Research Society, 73 (1) 2021, p. 70-90. See in PBN

2020

• TOMASZ BERUS, ANNA MARKIEWICZ, JOLANTA ORŁOWSKA-HEITZMAN, Agnieszka Hałoń, BOŻENA ROMANOWSKA-DIXON, Piotr Donizy, Przemysław Biecek , Clinical significance of nucleoli cytomorphology assessment in patients with uveal melanoma, Anticancer Research, 40 (6) 2020, p. 3505-3512. See in PBN
• Tomasz Berus, Anna Markiewicz, Katarzyna Kobylinska, Jolanta Orlowska-Heitzman, Bozena Romanowska-Dixon, Piotr Donizy, Przemysław Biecek , Downregulation of Polo-like kinase-1 (PLK-1) expression is associated with poor clinical outcome in uveal melanoma patient, Folia Histochemica et Cytobiologica, 58 (2) 2020, p. 108-116. See in PBN
• Karol Lis, Monika Gasik, Karolina Chromik, Grzegorz Basak, Bartosz Garus, Katarzyna Romanowska-Prochnicka, Adam Hajduk, Monika Ewa Swacha, Katarzyna Kurowska, Mateusz Staniak, Jadwiga Dwilewicz-Trojaczek, Malgorzata Paszkowska-Kowalewska, Magdalena Witkowska, Joanna Drozd-Sokołowska, Agnieszka Piekarska, Krzysztof Mądry, Renata Guzicka-Kazimierczak, Łukasz Bołkun, Mateusz Ziarkiewicz, Piotr Boguradzki, Piotr Smolewski, Wanda Knopińska-Posłuszny, Alina Świderska, Agnieszka Konska, Anna Waszczuk-Gajda, Aleksandra Bogucka-Fedorczuk, Rafał Machowicz, Przemysław Biecek , Dominik Bursa, Emilian Snarski, Bożena Budziszewska, Agnieszka Szymczyk, Marta Marszałek-Grabska, Patrycja Mensah-Glanowska, Wojciech Sydor, Katarzyna Popko, Wiesław Jędrzejczak, Edyta Cichocka, Michał Górka, Małgorzta Raźny, Katarzyna Brzeźniakiewicz-Janus, Dorota Zduńczyk, Justyna Gil, Slawomir Rejowski, Patrycja Zielinska, Katarzyna Kobylińska, EFFECTIVENESS OF ETOPOSIDE THERAPY IN ADULT HLH - ANALYSIS FROM THE PALG HLH IN ADULTS DATABASE, PEDIATRIC BLOOD & CANCER, Abstracts from the 35th Annual Meeting of the Histiocyte Society, Memphis, TN, the United States of America, 2 November 2019 - 4 November 2019, 67 (suppl. 1) 2020, p. 18-19. See in PBN
• Rudradev Sengupta, Nolen Joy Perualila, Ziv Shkedy, Przemysław Biecek , Geert Molenberghs, Luc Bijnens, High dimensional surrogacy: computational aspects of an upscaled analysis, Journal of Biopharmaceutical Statistics, 30 (1) 2020, p. 104-120. See in PBN
• Adam Gabriel Dobrakowski, Agnieszka Mykowiecka, Małgorzata Marciniak, Wojciech Jaworski, Przemysław Biecek , Interpretable Segmentation of Medical Free-Text Records Based on Word Embeddings, 25th International Symposium on Methodologies for Intelligent Systems, Gratz, Austria, 22 September 2020 - 24 September 2020. See in PBN
• Przemysław Biecek , Rafał Cylwa, Kornel Kiełczewski, Marta Machnik, Urszula Oleksiewicz, KRAB ZNF explorer-the online tool for the exploration of the transcriptomic profiles of KRAB-ZNF factors in The Cancer Genome Atlas., Bioinformatics, 36 (3) 2020, p. 980-981. See in PBN
• Anna Waszczuk-Gajda, Jolanta Małyszko, David H. Vesole, Magdalena Feliksbrot-Bratosiewicz, Kamila Skwierawska, Katarzyna Krzanowska, Katarzyna Kobylińska, Przemysław Biecek , Emilian Snarski, Anna Rodziewicz-Lurzyńska, Paweł Kozłowski, Agnieszka Stefaniak, Joanna Drozd-Sokołowska, Mateusz Ziarkiewicz, Pyush Vyas, Piotr Boguradzki, Krzysztof Mądry, Jarosław Biliński, Agnieszka Tomaszewska, Martyna Maciejewska, Elżbieta Urbanowska, Beata Blajer, M. Król, Hanna Zborowska, Artur Jurczyszyn, Jadwiga Dwilewicz-Trojaczek, Wieslaw W. Jedrzejczak, Grzegorz W. Basak, Negative Impact of Borderline Creatinine Concentration and Glomerular Filtration Rate at Baseline on the Outcome of Patients With Multiple Myeloma Treated With Autologous Stem Cell Transplant, Transplantation Proceedings, 52 (7) 2020, p. 2186-2192. See in PBN
• Maciej Kaczorowski, Przemysław Biecek , Piotr Donizy, Małgorzata Pieniążek, Rafał Matkowski, Agnieszka Hałoń, ROCK1 and ROCK2 are down-regulated in aggressive and advanced skin melanomas - A clinicopathological perspective, Anticancer Research, 40 (4) 2020, p. 1931-1942. See in PBN
• Joanna Drozd-Sokołowska, JM. Zaucha, Przemysław Biecek , A. Giza, K. Kobylinska, M. Joks, Tomasz Wróbel, B. Kumiega, W. Knopinska-Posluszny, W. Spychalowicz, Joanna Romejko-Jarosińska, J. Fischer, W. Wiktor-Jedrzejczak, Monika Długosz-Danecka, Sebastian Giebel, Wojciech Jurczak, Type 2 diabetes mellitus compromises the survival of diffuse large B-cell lymphoma patients treated with (R)-CHOP - the PLRG report, Scientific Reports, 10 (1) 2020, p. 1-9. See in PBN

2019

• Alicja Gosiewska, Przemysław Biecek , auditor: an R Package for Model-Agnostic Visual Validation and Diagnostics, R Journal, 11 (2) 2019, p. 85. See in PBN
• Przemysław Biecek , Marta Klimczak, Alicja Żylicz, Maciej Żylicz, Heat shock proteins create a signature to predict the clinical outcome in breast cancer., Scientific Reports, 9 (1) 2019, p. 7507:1-15. See in PBN
• Piotr Rudzki, Przemysław Biecek , Michał Kaza, Incurred Sample Reanalysis: Time to Change the Sample Size Calculation?, AAPS Journal, 21 (2) 2019, p. 1-8. See in PBN
• M. Kaczorowski, Przemysław Biecek , Piotr Donizy, Malgorzata Pieniazek, Rafal Matkowski, Agnieszka Halon, Low RhoA expression is associated with adverse outcome in melanoma patients: a clinicopathological analysis, American Journal of Translational Research, 11 (7) 2019, p. 4524-4532. See in PBN
• Barbara Rychalska, Dominika Basaj, Alicja Gosiewska, Przemysław Biecek , Models in the Wild: On Corruption Robustness of Neural NLP Systems, Lecture Notes in Computer Science, 26th International Conference on Neural Information Processing, Sydney, Australia, 12 December 2019 - 15 December 2019. See in PBN
• Tomasz Stanislawek, Anna Wróblewska, Alicja Wójcicka, Daniel Ziembicki, Przemysław Biecek , Named Entity Recognition - Is there a glass ceiling?, The 23rd Conference on Computational Natural Language Learning (CoNLL 2019), Hong Kong, China, 3 November 2019 - 4 November 2019. See in PBN
• Jerzy Kowalczyk, Roman Jaksik, Monika Kraszewska-Hamilton, Tomasz Szczepański, Katarzyna Zdon, Obul R Bandapalli, Andreas E Kulozik, Pieter Van Vlierberghe, Joachim B Kunz, Łukasz Sędek, Monika Drobna-Śledzińska, Maria Kosmalska, Bronisława Szarzyńska-Zawadzka, Michał Witt, Małgorzata Dawidowska, Przemysław Biecek , PTEN abnormalities predict poor outcome in children with T-cell acute lymphoblastic leukemia treated according to ALL IC-BFM protocols, American Journal of Hematology, 94 (4) 2019, p. E93-E96. See in PBN
• Maciej Kaczorowski, Przemysław Biecek , Piotr Donizy, Małgorzata Pieniążek, Rafał Matkowski, Agnieszka Hałoń, SMAD7 is a novel independent predictor of survival in patients with cutaneous melanoma, Translational Research, 204 2019, p. 72-81. See in PBN
• Przemysław Biecek , Marta Machnik, Andrzej Mackiewicz, Urszula Oleksiewicz, The expression signature of cancer-associated KRAB-ZNF factors identified in TCGA pan-cancer transcriptomic data., Molecular Oncology, 13 (4) 2019, p. 701-724. See in PBN
• Rafał Matkowski, Bartłomiej Szynglarewicz, Przemysław Biecek , Tomasz Michalik, The use of ultrasonic scalpel lowers the risk of post-mastectomy seroma formation in obese women, Journal of Cancer, 10 (15) 2019, p. 3481-3485. See in PBN
• Aleksandra Żbikowska, Małgorzata Kotwicka, Tomasz Kotwicki, Piotr Janusz, Piotr Harasymczuk, Mirosław Andrusiewicz, Przemysław Biecek , TIMP2 polymorphisms association with curve initiation and progression of thoracic idiopathic scoliosis in the Caucasian females., JOURNAL OF ORTHOPAEDIC RESEARCH, 37 (10) 2019, p. 2217-2225. See in PBN
• Rafał Matkowski, Bartłomiej Szynglarewicz, Józef Forgacz, Przemysław Biecek , Tomasz Michalik, Ultralow anterior resection with implantation of gentamicin-collagen sponge and no defunctioning stoma: anastomotic leakage and local cancer relapse, Radiology and Oncology, 53 (1) 2019, p. 77-84. See in PBN

2018

• Paweł Szwedyk, Magdalena Raźny, Agata Obara, Magdalena Dutka, Krzysztof Lewandowski, Grażyna Bober, Katarzyna Kapelko-Słowik, Agnieszka Piekarska, Beata Stella-Hołowiecka, Helena Krzemień, Małgorzata Paszkowska-Kowalewska, Waldemar Sawicki, Jadwiga Dwilewicz-Trojaczek, Krzysztof Mądry, Rafał Machowicz, Joanna Drozd-Sokołowska, Anna Waszczuk-Gajda, Przemysław Biecek , Bożena Budziszewska, Ewa Wasilewska, Atypical chronic myeloid leukaemia: A case of an orphan disease-A multicenter report by the Polish Adult Leukemia Group, Hematological Oncology, 36 (3) 2018, p. 570-575. See in PBN
• Rafał Matkowski, Piotr Donizy, Bartłomiej Szynglarewicz, Agnieszka Hałoń, Przemysław Biecek , Piotr Kasprzak, Biological Aggressiveness of Subclinical No-Mass Ductal Carcinoma In Situ (DCIS) Can Be Reflected by the Expression Profiles of EpithelialMesenchymal Transition Triggers, International Journal of Molecular Sciences, 19 (12/3941) 2018, p. 1-14. See in PBN
• Przemysław Biecek , DALEX: Explainers for Complex Predictive Models in R, JOURNAL OF MACHINE LEARNING RESEARCH, 19 2018, p. 1-5. See in PBN
• Przemysław Biecek , Mateusz Staniak, Explanations of model predictions with live and breakDown packages, R Journal, 10 (2) 2018, p. 395-409. See in PBN
• Przemysław Biecek , Extended 3D and 4D cumulative plots for evaluation of unmatched incurred sample reanalysis, Bioanalysis, 10 (3) 2018, p. 1-10. See in PBN
• Joanna Peradzyńska, Wiesław Jędrzejczak, Anna Waszczuk-Gajda, Magdalena Feliksbrot-Bratosiewicz, Jadwiga Dwilewicz-Trojaczek, M. Król, Magdalena Król, Joanna Drozd-Sokołowska, Zbigniew Lewandowski, Emilian Snarski, Przemysław Biecek , Influence of Clonal Plasma Cell Contamination of Peripheral Blood Stem Cell Autografts on Progression and Survival in Multiple Myeloma Patients After Autologous Peripheral Blood Stem Cell Transplantation in Long-term Observation, Transplantation Proceedings, 50 (7) 2018, p. 2202-2211. See in PBN
• Rafał Matkowski, Piotr Donizy, Agnieszka Hałoń, Maciej Kaczorowski, Przemysław Biecek , Nuclear pseudoinclusions in melanoma cells: prognostic fact or artifact? The possible role of Golgi phosphoprotein 3 overexpression in nuclear pseudoinclusions generation, Pathology International, 68 (2) 2018, p. 117-122. See in PBN
• Przemysław Biecek , Alicja Gosiewska, Aleksandra Grudziąż, survxai: an R package for structure-agnostic explanations of survival models, The Journal of Open Source Software, 3 (31) 2018, p. 1-5. See in PBN

2017

• Rafał Archacki, Ruslan Yatusevich, Daniel Buszewicz, Katarzyna Krzyczmonik, Jacek Patryn, Roksana Iwanicka-Nowicka, Przemysław Biecek , Bartosz Wilczyński , Marta Koblowska, Andrzej Jerzmanowski, Szymon Świeżewski, Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression., Nucleic Acids Research, 45 (6) 2017, p. 3116–3129. See in PBN
• Przemysław Biecek , Marcin Kosiński, archivist: An R Package for Managing, Recording and Restoring Data Analysis Results, Journal of Statistical Software, 82 (11) 2017, p. 1-28. See in PBN
• Przemysław Biecek , Piotr Rudzki, Michał Kaza, Comprehensive graphical presentation of data from incurred sample reanalysis, Bioanalysis, 9 (12) 2017, p. 1-9. See in PBN
• Maciej Beręsewicz, Adolfo Alvarez Pinto, Przemysław Biecek , Marcin Dyderski, Marcin Kosiński, Jakub Nowosad, Kamil Rotter, Alicja Szabelska-Beręsewicz, Marcin Szymkowiak, Joanna Zyprych-Walczak, Łukasz Wawrowski, Conference Report: European R Users Meeting 2016, R Journal, 9 (1) 2017, p. 501-504. See in PBN
• Bartłomiej Szynglarewicz, Piotr Kasprzak, Piotr Donizy, Przemysław Biecek , Agnieszka Hałoń, Rafał Matkowski, Epithelial-mesenchymal transition inducer Snail1 and invasive potential of intraductal breast cancer, Journal of Surgical Oncology, 116 (6) 2017, p. 696-705. See in PBN
• Ilona Kondratiuk, Szymon Łęski, Fred Van Leuven, Benoit Lechat, Herman Devijver, Przemysław Biecek , Tomasz Jaworski, LESZEK KACZMAREK, Małgorzata Urbańska, GSK-3β and MMP-9 Cooperate in the Control of Dendritic Spine Morphology, Molecular Neurobiology, 54 (1) 2017, p. 200-211. See in PBN
• Daniel H. Caro, Przemysław Biecek , Intsvy: An R Package for Analyzing International Large-Scale Assessment Data, Journal of Statistical Software, 81 (7) 2017, p. 1-44. See in PBN
• Zuzanna Tracz-Gaszewska, Marta Klimczak, Przemysław Biecek , Marcin Herok, Marcin Kosiński, MACIEJ OLSZEWSKI, Patrycja Czerwińska, Milena Wiech, Maciej Wiznerowicz, Bartosz Wawrzynów, Alicja Żylicz, Maciej Żylicz, Molecular chaperones in the acquisition of cancer cell chemoresistance with mutated TP53 and MDM2 up-regulation., Oncotarget, 8 (47) 2017, p. 82123-82143. See in PBN
• Rafał Matkowski, Piotr Donizy, Agnieszka Hałoń, Adam Maciejczyk, Przemysław Biecek , Nucleoli cytomorphology in cutaneous melanoma cells – a new prognostic approach to an old concept, Diagnostic Pathology, 12 (88) 2017, p. 1-9. See in PBN
• Leo Lahti, Janne Huovari, Markus Kainu, Przemysław Biecek , Retrieval and Analysis of Eurostat Open Data with the eurostat Package, R Journal, 9 (1) 2017, p. 385-392. See in PBN
• Wioletta Nowaczewska, Urszula Łapicka, Agata Cieślik, Przemysław Biecek , The relationship of cranial, orbital and nasal cavity size with the morphology of the supraorbital region in modern Homo sapiens, Anthropologischer Anzeiger, 74 (3) 2017, p. 241-246. See in PBN
• Marta Gładych, Ayush T Raman, Holger Heyn, Elisabetta Mereu, Paula Chlebanowska, Anastazja Andrzejewska, Barbara Sożańśka, Neha Samant, Katarzyna Fąk, Paulina Auguścik, Marcin Kosiński, Joanna P Wróblewska, Katarzyna Tomczak, Rafał Płoski, Przemysław Biecek , Manel Esteller, Parantu K Shah, Kunal Rai, Maciej Wiznerowicz, Katarzyna Kulcenty, Urszula Oleksiewicz, TRIM28 and Interacting KRAB-ZNFs Control Self-Renewal of Human Pluripotent Stem Cells through Epigenetic Repression of Pro-differentiation Genes, Stem Cell Reviews and Reports, 9 (6) 2017, p. 2065-2080. See in PBN
• Barbara Sozańska, Przemysław Biecek , Marta Klimczak, Patrycja Czerwińska, Sylwia Mazurek, Andrzej Mackiewicz, Maciej Wiznerowicz, TRIM28 epigenetic corepressor is indispensable for stable induced pluripotent stem cell formation., Stem Cell Research, 23 2017, p. 163-172. See in PBN
• Jannik Andersen, Przemysław Biecek , Patrycja Czerwińska, Violetta Filas, Marta Klimczak, Konstanty Korski, Andrzej Mackiewicz, Sylwia Mazurek, Parantu Shah, Barbara Sozańska, Katarzyna Tomczak, Maciej Wiznerowicz, TRIM28 multi-domain protein regulates cancer stem cell population in breast tumor development., Oncotarget, 8 (1) 2017, p. 863-882. See in PBN

2016

• Przemysław Biecek , Francesca Borgonovi, An international comparison of students' ability to endure fatigue and maintain motivation during a low-stakes test, Learning and Individual Differences, 2016. See in PBN
• Przemysław Biecek , BILL CD8 – A Multivariable Survival Model as a Simple and Clinically Useful Prognostic Tool to Identify High-risk Cutaneous Melanoma Patients, Anticancer Research, 36 (9) 2016, p. 4739-4747. See in PBN
• Piotr Donizy, Agnieszka Hałoń, Przemysław Biecek , Rafał Matkowski, BILLCD8 - a multivariable survival model as a simple and clinically useful prognostic tool to identify high-risk cutaneous melanoma patients, Anticancer Research, 36 (9) 2016, p. 4739-4747. See in PBN
• Przemysław Biecek , Piotr Donizy, Agnieszka Hałoń, Maciej Kaczorowski, Adam Maciejczyk, Rafał Matkowski, Contrary effect of two types of spatial distribution (diffuse versus marginal) of CD8-positive lymphocytes on clinical outcome in melanoma patients, International Journal of Clinical and Experimental Pathology, 9 (8) 2016, p. 8415-8423. See in PBN
• Przemysław Biecek , Ewelina Dobrzyńska, Andrzej Kiejna, Joanna Rymaszewska, Do mental health outpatient services meet users' needs? Trial to identify factors associated with higher needs for care, Community Mental Health Journal, 2016. See in PBN
• Przemysław Biecek , Piotr Donizy, Agnieszka Hałoń, Piotr Kasprzak, Rafał Matkowski, Bartłomiej Szynglarewicz, Ductal carcinoma in situ on stereotactic biopsy of suspicious breast microcalcifications: expression of SPARC (Secreted Protein, Acidic and Rich in Cysteine) can predict postoperative invasion, Journal of Surgical Oncology, 2016. See in PBN
• Piotr Donizy, Maciej Kaczorowski, Rafał Matkowski, Teresa Szkudlarek, Agnieszka Hałoń, Przemysław Biecek , Golgi-related proteins GOLPH2 (GP73/GOLM1) and GOLPH3 (GOPP1/MIDAS) in cutaneous melanoma: patterns of expression and prognostic significance, International Journal of Molecular Sciences, 2016. See in PBN
• Grzegorz Basak, Przemysław Biecek , Joanna Drozd-Sokołowska, Wiesław Jędrzejczak, Kazimierz Niemczyk, Jacek Sokołowski, Rhinosinusitis in Acute Leukemia Patients Undergoing Allogeneic Stem Cell Transplantation—A Single-Center Experience, Transplantation Proceedings, 12th Congress of the Polish Transplantation Society, 2016. See in PBN
• Przemysław Biecek , Agnieszka Hałoń, Piotr Kasprzak, Rafał Matkowski, Bartłomiej Szynglarewicz, Screen-detected ductal carcinoma in situ found on stereotactic vacuum-assisted biopsy of suspicious microcalcifications without mass: radiological-histological correlation, Radiology and Oncology, 2016. See in PBN

2015

• Przemysław Biecek , M Glowala, M Kosior, G Nowicka, A Sawicka, M Sokal, M Talalaj, M Wlodarczyk, M Wrzosek, Impact of obesity and nitric oxide synthase gene G894T polymorphism on essential hypertension, Journal of Physiology and Pharmacology, 66 (5) 2015, p. 681-689. See in PBN
• Przemysław Biecek , Łukasz Kuźmiński, Wioletta Nowaczewska, Morphological Relationship Between the Cranial and Supraorbital Regions in Homo sapiens, American Journal of Physical Anthropology, 2015. See in PBN
• Elżbieta Bartnikowska, Przemysław Biecek , Grzegorz Gielerak, Paweł Krzesiński, Ewelina Pałkowska-Goździk, Katarzyna Piotrowicz, Andrzej Skrobowski, Adam Stańczyk, Self-reported health-related behaviors and dietary habits in patients with metabolic syndrome, Cardiology Journal, 2015. See in PBN

2014

• Mirosław Banasik, Przemysław Biecek , Maria Boratyńska, Paweł Chudoba, Dorota Kamińska, Marian Klinger, K[atarzyna] Kościelska-Kasprzak, Magdalena Krajewska, Katarzyna Madziarska, Oktawia Mazanowska, Sławomir Zmonarski, M[arcelina] Żabińska, Advanced age of renal transplant recipients correlates with increased plasma concentrations of interleukin-6, chemokine ligand 2 (CCL2), and matrix metalloproteinase 2, and urine concentrations of CCL2 and tissue inhibitor of metalloproteinase 1, Transplantation Proceedings, 2014. See in PBN
• Przemysław Biecek , Jan Fronk, Emilia Jarochowska, Maciej Jończyk, Jorg Leipner, Alicja Sobkowiak, Paweł Sowiński, Joanna Trzcińska-Danielewicz, Genome-wide transcriptomic analysis of response to low temperature reveals candidate genes determining divergent cold-sensitivity of maize inbred lines., PLANT MOLECULAR BIOLOGY, 85 2014, p. 317-331. See in PBN
• Mirosław Banasik, Przemysław Biecek , Maria Boratyńska, Paweł Chudoba, Dorota Kamińska, Marian Klinger, K[atarzyna] Kościelska-Kasprzak, Magdalena Krajewska, Katarzyna Madziarska, Oktawia Mazanowska, Sławomir Zmonarski, M[arcelina] Żabińska, Increased plasma matrix metalloproteinase-2 (MMP-2), tissue inhibitor of proteinase-1 (TIMP-1), TIMP-2, and urine MMP-2 concentrations correlate with proteinuria in renal transplant recipients, Transplantation Proceedings, 11th Congress of the Polish-Transplantation-Society, Bydgoszcz, Poland, 28 November 2013 - 30 November 2013. See in PBN
• Hanna Baurska, Przemysław Biecek , Olga Haus, Bożena Jaźwiec, Marek Kiełbiński, Andrzej Kutner, Ewa Marcinkowska, Monocytic differentiation induced by side-chain modified analogs of vitamin D in ex vivo cells from patients with acute myeloid leukemia, Leukemia Research, 2014. See in PBN

2013

• Magdalena Krajewska, Mirosław Banasik, Dariusz Patrzałek, Paweł Chudoba, Marian Klinger, Marcelina Żabińska, Katarzyna Kościelska-Kasprzak, Oktawia Mazanowska, Maria Boratyńska, Dorota Kamińska, Przemysław Biecek , Increased plasma tissue inhibitors of metalloproteinase concentrations as negative predictors associated with deterioration of kidney allograft function upon long-term observation, Transplantation Proceedings, 2013. See in PBN
• Przemysław Biecek , Agnieszka Ochocka, Mirosław Ślusarczyk, Prevalence of kairomone-induced diapause in Daphnia magma from habitats with and without fish, Hydrobiologia, 2013. See in PBN

2012

• Matkowski Rafał, Wojciech Kielan, Piotr Donizy, Agnieszka Halon, Julia Rudno-Rudzińska, Przemysław Biecek , HER-2 Expression in Immunohistochemistry Has No Prognostic Significance in Gastric Cancer Patients, The Scientific World Journal, 2012. See in PBN
• Przemysław Biecek , Ewa Szczurek , Jerzy Tiuryn , Martin Vingron, The R Package bgmm: Mixture Modeling with Uncertain Knowledge, Journal of Statistical Software, 2012. See in PBN

2011

• Przemysław Biecek , Analiza danych w programie R, Modele z efektami stałymi, losowymi i mieszanymi, 2011. See in PBN
• Przemysław Biecek , Norbert Dojer , Jerzy Tiuryn , Bi-Billboard: Symmetrization and Careful Choice of Informant Species Results in Higher Accuracy of Regulatory Element Prediction, Journal of Computational Biology, 2011. See in PBN
• Przemysław Biecek , Irit Gat-Viks, Florian Markowetz, Ewa Szczurek , Jerzy Tiuryn , Martin Vingron, Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data, BMC Bioinformatics, 2011. See in PBN
• Przemysław Biecek , Iwona Gisterek, Agnieszka Halon, Jan Kornafel, Ewelina Lata, Rafał Matkowski, Jolanta Szelachowska, Prognostic role of c-met expression in breast cancer patients, Reports of Practical Oncology and Radiotherapy, 2011. See in PBN
• Przemysław Biecek , Przewodnik po pakiecie R, 2011. See in PBN
• Przemysław Biecek , Jan Fronk, Maciej Jończyk, Paweł Siedlecki, Alicja Sobkowiak, Paweł Sowiński, Jerzy Tiuryn , Joanna Trzcińska-Danielewicz, Rhythmic diel pattern of gene expression in juvenile maize leaf, PLoS ONE, 2011. See in PBN
• Przemysław Biecek , Wojciech Kustrzycki, Katarzyna Malcher, Joanna Rymaszewska, Joanna Szczepańska-Gieracha, Risk factors of depressive and anxiety symptoms 8 years after coronary artery bypass grafting, European Journal of Cardio-thoracic Surgery, 2011. See in PBN

2010

• Przemysław Biecek , I. Gisterek, A. Hałoń, J. Kornafel, R. Matkowski, E. Suder, J. Szelachowska, A. Łacko, E. Łata, Correlation between hepatocyte growth factor receptor and vascular endothelial growth factor-A in breast carcinoma, Folia Histochemica et Cytobiologica, 2010. See in PBN
• Przemysław Biecek , Ewa Szczurek , Jerzy Tiuryn , Martin Vingron, Introducing Knowledge into Differential Expression Analysis, Journal of Computational Biology, 2010. See in PBN
• Przemysław Biecek , M. Klinger, W. Kopeć, M. Kusztal, J. Kuźniar, Z. Marchewka, D. Patrzałek, M. Zynek-Litwin, Plasma and urine leukocyte elastase-alpha_1 protease inhibitor complex as a marker of early and long-term kidney graft function, Nephrology Dialysis Transplantation, 2010. See in PBN

2009

• Przemysław Biecek , M. Boratyńska, K. Falkiewicz, M. Klinger, M. Magott-Procelewska, D. Patrzałek, B. Speicher-Bidzińska, 1,25 Dihydroxyvitamin D Deficiency Predicts Poorer Out-come After Renal Transplantation, Transplantation Proceedings, 2009. See in PBN
• M. Boratyńska, M. Magott-Procelewska, D. Janczak, D. Patrzałek, P. Chudoba, M. Klinger, Przemysław Biecek , Estimated Glomerular Filtration Rate Evolution Between 6 and 24 Months Predicts Long-Term Kidney Transplant Sirvival Among Patients with Inferior Graft Function, Transplantation Proceedings, 2009. See in PBN
• Przemysław Biecek , M. Boratyńska, K. Falkiewicz, M. Klinger, A. Milewicz, D. Patrzałek, S.C. Zmonarski, Evolution of Bone Disease at 2 Years After Transplantation: A Single-Center Study, Transplantation Proceedings, 2009. See in PBN
• Przemysław Biecek , M. Bobenek, I. Gisterek, A. Harlozińska-Szmyrka, J. Kornafel, A. Lacko, R. Matkowski, M. Pudelko, U. Staszek, J. Szelachowska, Serum Vascular Endothelial Growth Factors A, C and D in Human Breast Tumors, Pathology Oncology Research, 2009. See in PBN

2008

• Przemysław Biecek , Małgorzata Bogdan, Riyan Cheng, R. Doerge, Florian Frommlet, Jayanta Ghosh, Extending the Modified Bayesian Information Criterion (mBIC) to Dense Markers and Multiple Interval Mapping, Biometrics, 2008. See in PBN
• M. Kusztal, W. Kopeć, Z. Marchewka, J. Kuźniar, Małgorzata Zynek-Litwin, M. Klinger, D. Patrzałek, B. Szymańska, Przemysław Biecek , Neutrophils degranulation marker - leucocyte elastase - A1 protease inhibitor complex: a~comparative study with classic (A1M, B2M) and novel (NGAL, IL-18) kidney graft injury markers, Transplantation, 2008. See in PBN
• Stanisław Cebrat, Przemysław Biecek , Krystian Bączkowski, Joanna Kiraga, Dorota Mackiewicz, Paweł Mackiewicz, MACIEJ SOBCZYŃSKI, Optimisation of Asymmetric Mutational Pressure and Selection Pressure Around the Universal Genetic Code, 2008. See in PBN
• Przemysław Biecek , Stanisław Cebrat, Dorota Mackiewicz, Wojciech Waga, Marta Zawierta, Phase Transition in Sexual Reproduction and Biological Evolution, International Journal of Modern Physics C, 2008. See in PBN
• Przemysław Biecek , Katarzyna Bońkowska, Stanisław Cebrat, Agnieszka Laszkiewicz, Relationship between the selection pressure and the rate of mutation accumulation, BANACH CENTER PUBLICATIONS, 2008. See in PBN
• Przemysław Biecek , M. Bębenek, Iwona Gisterek, J. Kornafel, A. Laćko, R. Matkowski, M. Pudełko, P. Sedlaczek, U. Staszek, K. Szewczyk, Vascular Endothelial Growth Factor C serum levels in patients with breast cancer, Radiotherapy and Oncology, 2008. See in PBN
• Przemysław Biecek , Stanisław Cebrat, Why Y chromosome is shorter and women live longer ?, European Physical Journal B, 2008. See in PBN

2007

• Andreas Baierl, Przemysław Biecek , Małgorzata Bogdan, Andreas Futschik, Locating multiple interacting quantitative trait loci using robust model selection, Computational Statistics and Data Analysis, 2007. See in PBN

Others

• Andreas Holzinger, Anna Saranti, Christoph Molnar, Przemyslaw Biecek, Wojciech Samek, Andreas Holzinger, Anna Saranti, Christoph Molnar, Przemysław Biecek , Wojciech Samek, Explainable AI Methods - A Brief Overview, , p. 13-38. See in PBN
• Katarzyna Kobylińska, Tomasz Mikołajczyk, Mariusz Adamek, Tadeusz Orłowski, Przemysław Biecek , Explainable Machine Learning for Modeling of Early Postoperative Mortality in Lung Cancer, Artificial Intelligence in Medicine: Knowledge Representation and Transparent and Explainable Systems - AIME 2019 International Workshops, KR4HC/ProHealth and TEAAM, Poznan, Poland, June 26–29, 2019, Revised Selected Papers, , p. 161-174. See in PBN
• Hubert Baniecki, Bartlomiej Sobieski, Przemysław Bombiński, Patryk Szatkowski, Przemysław Biecek, Hubert Baniecki, Przemysław Biecek , Hospital Length of Stay Prediction Based on Multi-modal Data Towards Trustworthy Human-AI Collaboration in Radiomics, , p. 65-74. See in PBN
• Michał Kuźba, Przemysław Biecek , What Would You Ask the Machine Learning Model? Identification of User Needs for Model Explanations Based on Human-Model Conversations, ECML PKDD 2020 Workshops, , p. 447-459. See in PBN
• Przemysław Biecek , Wyjaśnialna sztuczna inteligencja, Sztuczna inteligencja dla inżynierów. Istotne obszary i zastosowania, , p. 263-295. See in PBN