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Publications
Journal: Bioinformatics
Number of publications: 252023
- Mikołaj Spytek, Mateusz Krzyziński, Sophie Hanna, Hubert Baniecki, Marvin N, Przemysław Biecek, Sophie Hanna Langbein, Marvin N Wright, Przemysław Biecek , survex: an R package for explaining machine learning survival models, Bioinformatics, 39 (12) 2023. See in PBN
2021
- Jacek Sroka , Subhadip Basu, Nirmal Das, Pawel Trzaskoma, Yana Yushkevich, Agnieszka Grabowska, Dariusz Plewczynski, Grzegorz Bokota, ADRIANA MAGALSKA, PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies, Bioinformatics, 22 (1) 2021. See in PBN
2020
- Przemysław Biecek , Rafał Cylwa, Kornel Kiełczewski, Marta Machnik, Urszula Oleksiewicz, KRAB ZNF explorer-the online tool for the exploration of the transcriptomic profiles of KRAB-ZNF factors in The Cancer Genome Atlas., Bioinformatics, 36 (3) 2020, p. 980-981. See in PBN
- Neo Christopher Chung , Statistical significance of cluster membership for unsupervised evaluation of cell identities, Bioinformatics, 36 (10) 2020, p. 3107-3114. See in PBN
2019
- Aleksandra I Jarmolinska, Anna Gambin , Joanna Sułkowska, Knot_pull—python package for biopolymer smoothing and knot detection, Bioinformatics, 2019. See in PBN
- Ewa Szczurek , Jerzy Tiuryn , Learning signaling networks from combinatorial perturbations by exploiting siRNA off-target effects, Bioinformatics, 35 (14) 2019, p. i605-i614. See in PBN
- Aleksandra Gierut, Paweł Dąbrowski-Tumański, Wanda Niemyska , Kenneth Millett, Joanna Sułkowska, PyLink: a PyMOL plugin to identify links, Bioinformatics, 35 (17) 2019, p. 3166–3168. See in PBN
2017
- Aleksandra Gierut, Wanda Niemyska , Paweł Dąbrowski-Tumański, Piotr Sułkowski, Joanna Sułkowska, PyLasso: a PyMOL plugin to identify lassos, Bioinformatics, 33 (23) 2017, p. 3819–3821. See in PBN
2016
- Niko Beerenwinkel, Ewa Szczurek , Linear effects models of signaling pathways from combinatorial perturbation data., Bioinformatics, 2016. See in PBN
- Aleksander Jankowski , Jerzy Tiuryn , Shyam Prabhakar, Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data, Bioinformatics, 32 (16) 2016, p. 2419–2426. See in PBN
2015
- Piotr Pokarowski , Renata Zbieć-Piekarska, Rafał Płoski, Agnieszka Sołtys, Wojciech Branicki, Magdalena Spólnicka, Piotr Gasperowicz, Piotr Stawiński, Joanna Kosińska, A cautionary note on using binary calls for analysis of DNA methylation, Bioinformatics, 2015. See in PBN
- Janusz Bujnicki, Łukasz Kozłowski , Michal J. Pietal, GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function, Bioinformatics, 2015. See in PBN
- Neo Christopher Chung , John D. Storey, Statistical significance of variables driving systematic variation in high-dimensional data, Bioinformatics, 31 (4) 2015, p. 545-554. See in PBN
- Niko Beerenwinkel, Simona Constantinescu, Pejman Mohammadi1, Jörg Rahnenführer, Ewa Szczurek , TiMEx: a waiting time model for mutually exclusive cancer alterations, Bioinformatics, 2015. See in PBN
2014
- Navodit Misra, Ewa Szczurek , Martin Vingron, Inferring the paths of somatic evolution in cancer, Bioinformatics, 2014. See in PBN
- A. Charzyńska, Anna Gambin , T. Jetka, Michał Komorowski, M. P. Stumpf, StochDecomp--Matlab package for noise decomposition in stochastic biochemical systems, Bioinformatics, 2014. See in PBN
2013
- Paweł Bednarz, Norbert Dojer , Agnieszka Podsiadlo, Bartosz Wilczyński , BNFinder2: Faster Bayesian network learning and Bayesian classification, Bioinformatics, 2013. See in PBN
2011
- Andrzej Kierzek, Łukasz Krupa, Jacek Sroka , Jerzy Tyszkiewicz , CalcTav - Integration of a Spreadsheet and Taverna Workbench, Bioinformatics, 2011. See in PBN
2009
- Tiago Antao, Jeffrey T. Chang, Brad A. Chapman, Peter J. A. Cock, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartosz Wilczyński , Michiel J. L. de Hoon, Biopython: freely available Python tools for computational molecular biology and bioinformatics., Bioinformatics, 2009. See in PBN
- Norbert Dojer , Bartosz Wilczyński , BNFinder: Exact and efficient method for learning Bayesian networks, Bioinformatics, 2009. See in PBN
2007
- Anna Gambin , P. Wojtalewicz, CTX-BLAST - context sensitive version of protein BLAST, Bioinformatics, 2007. See in PBN
- Paweł Górecki , Jerzy Tiuryn , Inferring phylogeny from whole genomes, Bioinformatics, 2007. See in PBN
- Paweł Górecki , Jerzy Tiuryn , URec: a system for unrooted reconciliation, Bioinformatics, 2007. See in PBN
2006
- Grzegor Kaczor, Andrzej Kierzek, Jacek Sroka , Jerzy Tyszkiewicz , XQTav: an XQuery processor for Taverna environment, Bioinformatics, 2006. See in PBN
2002
- Anna Gambin , Sławomir Lasota , Radosław Szklarczyk, Jerzy Tiuryn , Jerzy Tyszkiewicz , Contextual Alignment of Biological Sequences, Bioinformatics, 2002. See in PBN