Seminar Computational Biology and Bioinformatics

Organizers

• prof. dr hab. Anna Gambin
• dr Aleksander Jankowski
• dr hab. Bartosz Wilczyński, prof. ucz.

Information

Home page

Research fields

• Computational Biology and Bioinformatics

List of talks

• May 11, 2022, 10:15 a.m.
  Grzegorz Preibisch (MIM UW and Covid Genomics)
  Machine Learning in Evolution prediction
  

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• April 27, 2022, 10:15 a.m.
  Paulina Szymczak (MIM UW)
  Explainable variational autoencoder for multiomics scRNA-seq data
  

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• April 20, 2022, 10:15 a.m.
  Jarosław Paszek (MIM UW)
  Taming the Duplication-Loss-Coalescence Model with Integer Linear Programming
  

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• April 13, 2022, 10:15 a.m.
  Adam Izdebski (MIM UW)
  How to discover optimal drug-like molecules with machine learning?
  

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• April 6, 2022, 10:15 a.m.
  Damian Wójtowicz (National Institutes of Health (NIH/NLM/NCBI))
  Signatures of mutational processes in cancer: methods and mechanisms
  Cancer genomes accumulate a large number of somatic mutations resulting from imperfections of DNA processing, naturally occurring DNA damage, replication errors, dysregulation of DNA repair mechanisms, and carcinogenic exposures. These mutagenic processes often produce characteristic …

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• March 30, 2022, 10:15 a.m.
  Krzysztof Kazimierczuk (Centre of New Technologies, University of Warsaw)
  NMR spectroscopy as a playground for armchair mathematicians
  Nuclear magnetic resonance (NMR) spectroscopy is a branch of chemical analysis, finding applications in material science, structural biology, chemical synthesis, pharma industry, food profiling, medical screening and many other fields. To apply NMR, we need …

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• March 23, 2022, 10:15 a.m.
  Agnieszka Geras (MIM UW and Warsaw University of Technology)
  Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data
  

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• March 16, 2022, 10:15 a.m.
  Barbara Domżał (MIM UW)
  The problem of regression for mass spectra and NMR spectra
  

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• March 9, 2022, 10:15 a.m.
  Magdalena Machnicka (MIM UW)
  Identification of potential regulatory mechanisms linking genetic polymorphisms with Alzheimer's disease pathology
  

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• March 2, 2022, 10:15 a.m.
  Nimisha Ghosh (MIM UW)
  Interactome based Machine Learning predicts Potential Therapeutics for COVID-19
  

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• Jan. 26, 2022, 10:15 a.m.
  Bartek Wilczyński (MIM UW)
  Data selection for training neural networks to predict regulatory elements genome wide
  

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• Jan. 19, 2022, 10:15 a.m.
  Krzysztof Gogolewski (MIM UW)
  Risk assessment of COVID-19 pandemic resurgence in relation to SARS-CoV-2 variants and vaccination passes
  

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• Jan. 12, 2022, 10:15 a.m.
  Krzysztof Koras (MIM UW)
  Variational autoencoders with latent space clustering
  

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• Dec. 22, 2021, 10:15 a.m.
  Marcin Możejko (MIM UW)
  HydrAMP: a deep generative model for antimicrobial peptide discovery
  

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• Dec. 15, 2021, 10:15 a.m.
  Sylwester Swat (Institute of Computing Science, Poznań University of Technology)
  ALGA – a new algorithm for genome assembly
  

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