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Weekly research seminar.
Organizers
- prof. dr hab. Anna Gambin
- dr Aleksander Jankowski
- dr hab. Bartosz Wilczyński, prof. ucz.
Information
Wednesdays, 10:15 a.m. , room: 3250Home page
https://bioputer.mimuw.edu.pl/seminars/bob/Research fields
List of talks
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May 15, 2013, 10:30 a.m.
Paweł Bednarz (Uniwersytet Warszawski)
The problem of disovering differential regulatory elements between cell types
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May 8, 2013, 10:30 a.m.
Krisztian Buza (Uniwersytet Warszawski)
Assisted Genome Assembly: An introduction and initial results
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April 17, 2013, 10:30 a.m.
Bartek Wilczyński (Uniwersytet Warszawski)
Interesting papers from RECOMB 2013, a subjective review
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April 10, 2013, 10:30 a.m.
Jacek Patryn (IBB PAN)
Chromatin remodeling, a key process in regulation of global genome expression
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April 3, 2013, 10:30 a.m.
Michał Boniecki (IIMCB Warszawa)
SimRNA: program for RNA folding simulations.
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March 27, 2013, 10:30 a.m.
Murodzhon Akhmedov (Sabanci University, Instanbul)
Metaheuristic Algorithm Applications for the NMR Protein Structure-Based Assignment Problem
X-Ray Crystallography and Nuclear Magnetic Resonance (NMR) spectroscopy are two major experimental techniques for obtaining structural information of proteins. Since the X-Ray approach is costly and time consuming, the NMR approach is gaining great interest …
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March 13, 2013, 10:30 a.m.
Thierry Mora (Laboratoire de Physique Statistique, Ecole Normale Supérieure)
Maximum entropy models of biological data
Biology has many examples of systems of agents acting collectively in fundamentally different ways than they would individually. Maximum entropy models provide a useful tool for analysing these collective phenomena directly from data. We will …
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March 6, 2013, 10:30 a.m.
Aleksandra Walczak (Laboratoire de Physique Théorique, Ecole Normale Supérieure)
Quantifying immune receptor diversity.
Recognition of pathogens relies on the diversity of immune receptor proteins. Recent experiments that sequence the entire immune cell repertoires provide a new opportunity for quantitative insight into naturally occurring diversity and how it is …
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Feb. 27, 2013, 10:30 a.m.
Torgeir Hvidsten (Norwegian University of Life Sciences)
Comparative analysis of gene regulatory networks in plants
We use co-expression networks to study the evolution of gene regulation in Arabidopsis, Rice and Populus. The approach highlights conservation and divergence of various network properties, rather than of protein sequence, and offers some novel …
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Feb. 20, 2013, 10:15 a.m.
Dirk Valkenborg (Vision on technology - vito.be)
A Markov-chain-based regression model for the analysis of high-resolution enzymatically 18O-labeled mass spectra
To reduce the variability on the data and facilitate a statistical analysis, stable-isotope coding is often used, such that peptides from distinct groups can be pooled together and analyzed simultaneously on the mass spectrometer. In …
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Jan. 23, 2013, 10:30 a.m.
Michał Komorowski (IPPT PAN)
How cells do statistics? Inference, signal transduction and experimental design.
Living cells are forced to solve inference problems as they measure constantly changing parameters of their environment. Cellular biochemical machineries encode certain experimental procedures, which, at least to some extent, must have been evolutionary optimised. …
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Jan. 16, 2013, 10:30 a.m.
Szymon Kiełbasa (Bioinformatics Center of Expertise, Leiden University Medical Center)
Estimation of telomere lengths from whole-genome-sequencing data
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Dec. 19, 2012, 10:30 a.m.
Agata Charzyńska (IPI PAN i MIM UW)
Variance decomposition in biomolecular models of signaling pathways.
