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Journal: Bioinformatics

Number of publications: 24

2023

Mikołaj Spytek, Mateusz Krzyziński, Sophie Hanna Langbein, Hubert Baniecki, Marvin N Wright, Przemysław Biecek , survex: an R package for explaining machine learning survival models, Bioinformatics, 39 (12) 2023. See in PBN

Przemysław Biecek , Rafał Cylwa, Kornel Kiełczewski, Marta Machnik, Urszula Oleksiewicz, KRAB ZNF explorer-the online tool for the exploration of the transcriptomic profiles of KRAB-ZNF factors in The Cancer Genome Atlas., Bioinformatics, 36 (3) 2020, p. 980-981. See in PBN
Neo Christopher Chung , Statistical significance of cluster membership for unsupervised evaluation of cell identities, Bioinformatics, 36 (10) 2020, p. 3107-3114. See in PBN

Aleksandra I Jarmolinska, Anna Gambin , Joanna Sułkowska, Knot_pull—python package for biopolymer smoothing and knot detection, Bioinformatics, 2019. See in PBN
Ewa Szczurek , Jerzy Tiuryn , Learning signaling networks from combinatorial perturbations by exploiting siRNA off-target effects, Bioinformatics, 35 (14) 2019, p. i605-i614. See in PBN
Aleksandra Gierut, Paweł Dąbrowski-Tumański, Wanda Niemyska , Kenneth Millett, Joanna Sułkowska, PyLink: a PyMOL plugin to identify links, Bioinformatics, 35 (17) 2019, p. 3166–3168. See in PBN

Aleksandra Gierut, Wanda Niemyska , Paweł Dąbrowski-Tumański, Piotr Sułkowski, Joanna Sułkowska, PyLasso: a PyMOL plugin to identify lassos, Bioinformatics, 33 (23) 2017, p. 3819–3821. See in PBN

Niko Beerenwinkel, Ewa Szczurek , Linear effects models of signaling pathways from combinatorial perturbation data., Bioinformatics, 2016. See in PBN
Aleksander Jankowski , Jerzy Tiuryn , Shyam Prabhakar, Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data, Bioinformatics, 32 (16) 2016, p. 2419–2426. See in PBN

Wojciech Branicki, Piotr Gasperowicz, Joanna Kosińska, Piotr Pokarowski , Agnieszka Sołtys, Rafał Płoski, Magdalena Spólnicka, Piotr Stawiński, Renata Zbieć-Piekarska, A cautionary note on using binary calls for analysis of DNA methylation, Bioinformatics, 31 (9) 2015, p. 1519-1520. See in PBN
Janusz Bujnicki, Łukasz Kozłowski , Michal J. Pietal, GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function, Bioinformatics, 2015. See in PBN
Neo Christopher Chung , John D. Storey, Statistical significance of variables driving systematic variation in high-dimensional data, Bioinformatics, 31 (4) 2015, p. 545-554. See in PBN
Niko Beerenwinkel, Simona Constantinescu, Pejman Mohammadi1, Jörg Rahnenführer, Ewa Szczurek , TiMEx: a waiting time model for mutually exclusive cancer alterations, Bioinformatics, 2015. See in PBN

Navodit Misra, Ewa Szczurek , Martin Vingron, Inferring the paths of somatic evolution in cancer, Bioinformatics, 2014. See in PBN
Anna Gambin , A. Charzyńska, T. Jetka, Michał Komorowski, M. P. Stumpf, StochDecomp--Matlab package for noise decomposition in stochastic biochemical systems, Bioinformatics, 30 (1) 2014, p. 137-138. See in PBN

Paweł Bednarz, Norbert Dojer , Agnieszka Podsiadlo, Bartosz Wilczyński , BNFinder2: Faster Bayesian network learning and Bayesian classification, Bioinformatics, 2013. See in PBN

Andrzej Kierzek, Łukasz Krupa, Jacek Sroka , Jerzy Tyszkiewicz , CalcTav - Integration of a Spreadsheet and Taverna Workbench, Bioinformatics, 2011. See in PBN

Tiago Antao, Jeffrey T. Chang, Brad A. Chapman, Peter J. A. Cock, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartosz Wilczyński , Michiel J. L. de Hoon, Biopython: freely available Python tools for computational molecular biology and bioinformatics., Bioinformatics, 2009. See in PBN
Norbert Dojer , Bartosz Wilczyński , BNFinder: Exact and efficient method for learning Bayesian networks, Bioinformatics, 2009. See in PBN

Anna Gambin , P. Wojtalewicz, CTX-BLAST - context sensitive version of protein BLAST, Bioinformatics, 2007. See in PBN
Paweł Górecki , Jerzy Tiuryn , Inferring phylogeny from whole genomes, Bioinformatics, 2007. See in PBN
Paweł Górecki , Jerzy Tiuryn , URec: a system for unrooted reconciliation, Bioinformatics, 2007. See in PBN

Grzegor Kaczor, Andrzej Kierzek, Jacek Sroka , Jerzy Tyszkiewicz , XQTav: an XQuery processor for Taverna environment, Bioinformatics, 2006. See in PBN