Publications

Journal: GENOME BIOLOGY

2023

• Agnieszka Geras, Shadi Darvish Shafighi , Konrad Domżał, IWONA FILIPIUK, Łukasz Rączkowski, Paulina Szymczak, Hosein Toosi, LESZEK KACZMAREK, Łukasz Koperski, Jens Lagergren, Dominika Nowis, Ewa Szczurek , Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data, GENOME BIOLOGY, 24 (1) 2023, p. 120: 1-36. See in PBN
• Barbara Poszewiecka, Krzysztof Gogolewski , Justyna A. Karolak, Paweł Stankiewicz, Anna Gambin , PhaseDancer: a novel targeted assembler of segmental duplications unravels the complexity of the human chromosome 2 fusion going from 48 to 46 chromosomes in hominin evolution, GENOME BIOLOGY, 24 (1) 2023. See in PBN

2022

• Magda Markowska, Tomasz Cąkała, Bogac Aybey, Dilafruz Juraeva, Johanna Mazur, Edith Ross, Eike Staub, Ewa Szczurek , Błażej Miasojedow , CONET: copy number event tree model of evolutionary tumor history for single-cell data, GENOME BIOLOGY, 23 (1) 2022. See in PBN
• Senbai Kang, Nico Borgsmüller, Monica Valecha, Jack Kuipers, Joao M. Alves, Sonia Prado-López, Débora Chantada, Niko Beerenwinkel, David Posada, Ewa Szczurek , SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data, GENOME BIOLOGY, 23 (1) 2022. See in PBN

2020

• David Lähnemann, Johannes Köster, Ewa Szczurek , Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Kieran R. Campbell, Niko Beerenwinkel, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P.F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth, Eleven grand challenges in single-cell data science, GENOME BIOLOGY, 21 (1) 2020. See in PBN

2015

• Daniel Andritschke, Niko Beerenwinkel, Alain Casanova, Raquel Conde-Alvarez, Christoph Dehio, Sabrina Dilling, Simone Eicher, Mario Emmenlauer, Wolf-Dietrich Hardt, Saskia Kreibich, Shyan Huey Low, Simone Muntweiler, Pauli Rämö, Fabian Schmich, Ewa Szczurek , Christian von Mering, gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens, GENOME BIOLOGY, 2015. See in PBN