Publications

Journal: Nucleic Acids Research

Number of publications: 22

2022

• Barbara Poszewiecka, Victor Murcia Pienkowski, Karol Nowosad, Jérôme D Robin, Krzysztof Gogolewski , Anna Gambin , TADeus2: a web server facilitating the clinical diagnosis by pathogenicity assessment of structural variations disarranging 3D chromatin structure, Nucleic Acids Research, 50 (W1) 2022, p. W744-W752. See in PBN

2021

• Łukasz Kozłowski , IPC 2.0: prediction of isoelectric point and pKa dissociation constants, Nucleic Acids Research, 49 (W1) 2021, p. W285–W292. See in PBN
• Łukasz Kozłowski , Proteome-pI 2.0: proteome isoelectric point database update, Nucleic Acids Research, 2021, p. 1-6. See in PBN

2018

• Xuecong Wang, Yogesh Srivastava, Aleksander Jankowski , Vikas Malik, Yuanjie Wei, Ricardo CH del Rosario, Vlad Cojocaru, Shyam Prabhakar, Ralf Jauch, DNA-mediated dimerization on a compact sequence signature controls enhancer engagement and regulation by FOXA1, Nucleic Acids Research, 46 (11) 2018, p. 5470–5486. See in PBN
• Henri Niskanen, Irina Tuszyńska, Rafał Zaborowski, Merja Heinäniemi, Seppo Ylä-Herttuala, Bartosz Wilczyński , Minna U Kaikkonen, Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions, Nucleic Acids Research, 46 (4) 2018, p. 1724–1740. See in PBN
• Joanna Sułkowska, Szymon Niewieczerzał, Aleksandra Jarmolińska, Jonathan Siebert, Peter Virnau, Wanda Niemyska , KnotGenome: a server to analyze entanglements of chromosomes, Nucleic Acids Research, 46 (W1) 2018, p. W17-W24. See in PBN
• Pietro Boccaletto, Magdalena Machnicka , Elżbieta Purta, Paweł Piątkowski, Błażej Bagiński, Tomasz Wirecki, Valérie de Crécy-Lagard, Robert Ross, Patrick A Limbach, Annika Kotter, Mark Helm, Janusz Bujnicki, MODOMICS: a database of RNA modification pathways. 2017 update, Nucleic Acids Research, 46 (D1) 2018, p. D303–D307. See in PBN

2017

• Rafał Archacki, Ruslan Yatusevich, Daniel Buszewicz, Katarzyna Krzyczmonik, Jacek Patryn, Roksana Iwanicka-Nowicka, Przemysław Biecek , Bartosz Wilczyński , Marta Koblowska, Andrzej Jerzmanowski, Szymon Świeżewski, Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression., Nucleic Acids Research, 45 (6) 2017, p. 3116–3129. See in PBN
• Paweł Dśbrowski-Tumański, Aleksandra I. Jarmolińska, Wanda Niemyska , Eric J. Rawdon, Kenneth C. Millett, Joanna Sułkowska, LinkProt: a database collecting information about biological links, Nucleic Acids Research, 2017. See in PBN
• Łukasz Kozłowski , Proteome-pI: proteome isoelectric point database, Nucleic Acids Research, 2017. See in PBN
• Dorota Matelska, Jagoda Jabłónska, Adriana Zyła, Elżbieta Jankowska, Janusz Bujnicki, Tomasz Waleń , Dorota Niedziałek, Paweł Piątkowski, WAYNE DAWSON, SupeRNAlign: A new tool for flexible superposition of homologous RNA structures and inference of accurate structure-based sequence alignments, Nucleic Acids Research, 45 (16) 2017, p. 1-10. See in PBN

2016

• Paweł Dąbrowski-Tumański, Wanda Niemyska , Paweł Pasznik, Joanna Sułkowska, LassoProt: server to analyze biopolymers with lassos, Nucleic Acids Research, 2016. See in PBN

2015

• Ian M. Campbell, Anna Gambin , Tomasz Gambin, Patricia Hixson, Chad A. Shaw, Paweł Stankiewicz, Michał Startek , Przemyslaw Szafranski, Genome-wide analyses of LINE–LINE-mediated nonallelic homologous recombination, Nucleic Acids Research, 2015. See in PBN
• Justyna Czarnecka, Grzegorz Chojnowski, Łukasz Kozłowski , Janusz Bujnicki, Dawid Głów, Dariusz Pianka, Agata SULEJ, Krzysztof Skowronek, Sequence-specific cleavage of dsRNA by Mini-III RNase, Nucleic Acids Research, 2015. See in PBN

2014

• Janusz Bujnicki, Grzegorz Chojnowski, Przemysław Gierski, Tomasz Waleń , ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes, Nucleic Acids Research, 2014. See in PBN
• Michał Jamróz, Kenneth C. Millett, Wanda Niemyska , Eric J. Rawdon, Andrzej Stasiak, Joanna Sułkowska, Piotr Sułkowski, KnotProt: a database of proteins with knots and slipknots., Nucleic Acids Research, 2014. See in PBN
• Janusz Bujnicki, Grzegorz Chojnowski, Tomasz Waleń , RNA Bricks - a database of RNA 3D motifs and their interactions, Nucleic Acids Research, 2014. See in PBN

2013

• Allan R. Brasier, Norbert Dojer , Shuhua Fu, Abhishek Mitra, Maga Rowicka, Jun Yang, A probabilistic approach to learn chromatin architecture and accurate inference of the NF-kappa B/RelA regulatory network using ChIP-Seq, Nucleic Acids Research, 2013. See in PBN
• Janusz Bujnicki, Łukasz Kozłowski , Tomasz Puton, Kristian M. Rother, CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction, Nucleic Acids Research, 2013. See in PBN
• Anna Łukasik, Marcin Skorupski, Kaja Milanowska, Katarzyna Mikołajczak, Kristian M. Rother, Martyna Nowacka, Zuzanna Balcer, Janusz Bujnicki, Magdalena Machnicka , RNApathwaysDB—a database of RNA maturation and decay pathways, Nucleic Acids Research, 2013. See in PBN

2012

• Kaja Milanowska, Okan Osman Oglou, Elzbieta Purta, Anna Olchowik, Witold Januszewski, Sebastian Kalinowski, Kristian M. Rother, Mark Helm, Janusz M. Bujnicki, Henri Grosjean, Małgorzata Kurkowska, Magdalena Machnicka , Stanisław Dunin-Horkawicz, MODOMICS: a database of RNA modification pathways—2013 update, Nucleic Acids Research, 41 (D1) 2012, p. D262-D267. See in PBN

2008

• Minoru Kanehisa, Toshiaki Katayama, Shuichi Kawashima, Andrzej Koliński, Maria Pokarowska, Piotr Pokarowski , AAindex: amino acid index database, progress report 2008, Nucleic Acids Research, 2008. See in PBN