Publications

Journal: BMC Bioinformatics

Number of publications: 17

2021

• Grzegorz Bokota, Jacek Sroka , Subhadip Basu, Nirmal Das, Pawel Trzaskoma, Yana Yushkevich, Agnieszka Grabowska, ADRIANA MAGALSKA, Dariusz Plewczynski, PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies, BMC Bioinformatics, 22 (1) 2021, p. 72:1-15. See in PBN

2019

• Neo Christopher Chung , Błażej Miasojedow , Michał Startek , Anna Gambin , Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data, BMC Bioinformatics, 20 (S15) 2019, p. 1-11. See in PBN

2017

• Michał Startek , Jakub Nogły, Dariusz Grzebelus, Anna Gambin , Agnieszka Gromadka, Inferring transposons activity chronology by TRANScendence - TEs database and de-novo mining tool, BMC Bioinformatics, 18 (suppl. 12) 2017, p. 57-66. See in PBN

2015

• Norbert Dojer , MICHAŁ DĄBROWSKI, Bożena Kamińska, Izabella Krystkowiak, Bartosz Wilczyński , Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data, BMC Bioinformatics, 2015. See in PBN
• Katarzyna H. Kaminska, Janusz Bujnicki, Magdalena Machnicka , Stanisław Dunin-Horkawicz, Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes, BMC Bioinformatics, 2015. See in PBN

2014

• Oliver Eulenstein, Paweł Górecki , Refining Discordant Gene Trees, BMC Bioinformatics, 2014. See in PBN

2012

• Oliver Eulenstein, Paweł Górecki , Algorithms: Simultaneous Error-Correction and Rooting for Gene Tree Reconciliation and the Gene Duplication Problem, BMC Bioinformatics, 2012. See in PBN
• Piotr Dittwald, Anna Gambin , Jakub Karczmarski, Jerzy Ostrowski, Inferring serum proteolytic activity from LC-MS/MS data, BMC Bioinformatics, 2012. See in PBN
• Janusz Bujnicki, Łukasz Kozłowski , MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins, BMC Bioinformatics, 2012. See in PBN

2011

• Claudio Avignone-Rossa, Łukasz Bieniasz-Krzywiec, Michael Bushell, Szymon Gwozdz, Andrzej Kierzek, Dariusz Leniowski, Mateusz Markowski, Johnjoe McFadden, Jacek Sroka , Jakub Łącki, Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface, BMC Bioinformatics, 2011. See in PBN
• Przemysław Biecek , Irit Gat-Viks, Florian Markowetz, Ewa Szczurek , Jerzy Tiuryn , Martin Vingron, Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data, BMC Bioinformatics, 2011. See in PBN
• Gordon Burleigh, Oliver Eulenstein, Paweł Górecki , Maximum likelihood models and algorithms for gene tree evolution with duplications and losses, BMC Bioinformatics, 2011. See in PBN

2010

• Jakub Mieczkowski, Piotr Pokarowski , Magdalena E. Tyburczy, MICHAŁ DĄBROWSKI, Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements, BMC Bioinformatics, 2010. See in PBN

2009

• Norbert Dojer , Mateusz Patelak, Jerzy Tiuryn , Bartosz Wilczyński , Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs, BMC Bioinformatics, 2009. See in PBN

2007

• Janusz Dutkowski, Anna Gambin , On consensus biomarker selection, BMC Bioinformatics, 2007. See in PBN

2006

• Norbert Dojer , Anna Gambin , A. Mizera, Jerzy Tiuryn , Bartosz Wilczyński , Applying Dynamic Bayesian Networks to Perturbed Gene Expression Data, BMC Bioinformatics, 2006. See in PBN
• K. Fidelis, Tr. Hvidsten, J. Komorowski, A. Kryshtafovych, Jerzy Tiuryn , Bartosz Wilczyński , Using local gene expression similarities to discover regulatory binding site modules, BMC Bioinformatics, 2006. See in PBN