Publications
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S. Nowakowski, P. Pokarowski, W. Rejchel, A. Soltys,
Improving Group Lasso for high-dimensional categorical data
International Conference on Computational Science (ICCS) 2023.
Supplemental Material
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P. Pokarowski, W. Rejchel, A. Soltys, M. Frej and J. Mielniczuk,
Improving Lasso for model selection and prediction
Scandinavian Journal of Statistics, https://doi.org/10.1111/sjos.12546, 2021.
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M. Metrak, P. Pokarowski, M. Sulwinski, A. Gantumur and M. Suska-Malawska,
Plant response to N availability in permafrost-affected alpine wetlands in arid and semi-arid climate zones
Science of the Total Environment, 721, 137791, 2020.
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T. Bem, P. Pokarowski and P. Meyrand,
Do Altruists Like Equity?
Social Psychological Bulletin, e28284, 14(1), 2019.
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A. Maj-Kanska, P. Pokarowski and A. Prochenka,
Delete or merge regressors for linear model selection.
Electronic Journal of Statistics, 9, 1749-1778, 2015.
Package DMR on CRAN
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P. Pokarowski and J. Mielniczuk,
Combined l1 and greedy l0 penalized least squares for linear model selection.
Journal of Machine Learning Research, 16, 961-992, 2015.
Supplemental Material
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A. Prochenka, P. Pokarowski, P. Gasperowicz, J. Kosinska, P.Stawinski, R. Zbiec-Piekarska,
M. Spolnicka, W. Branicki and R. Ploski,
A cautionary note on using binary calls for analysis of DNA methylation .
Bioinformatics, 31(9), 1519-1520, 2015.
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L. Gajek, W. Niemiro and P. Pokarowski,
Optimal Monte Carlo integration with fixed relative precision.
Journal of Complexity, 29, 4-26, 2013.
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D. Rabczenko, P. Pokarowski, B. Wojtyniak and A. Poznanska,
Mortality atlas as a useful tool for detecting unexpected spatial
patterns of mortality in Poland.
European Journal of Public Health, 22, Supplement: 2, 157-158, 2012.
Web version of the mortality atlas (in Polish)
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J. Mieczkowski, M. E. Tyburczy, M. Dabrowski and P. Pokarowski,
Probe set filtering increases correlation between Affymetrix
GeneChip and qRT-PCR expression measurements.
BMC Bioinformatics, 11:104, 2010.
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M. E. Tyburczy, K. Kotulska, P. Pokarowski, J. Mieczkowski, J. Kucharska,
W. Grajkowska, M. Roszkowski, S. Jozwiak and B. Kaminska,
Novel proteins regulated by mTOR in subependymal giant cell astrocytomas
of patients with tuberous sclerosis complex and new therapeutic implications .
American Journal of Pathology, 176, 1878-1890, 2010.
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W. Niemiro and P. Pokarowski,
Fixed Precision MCMC estimation by Median of Products of Averages.
Journal of Applied Probability, 46(2), 309-329, 2009.
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A. Kloczkowski, R. L. Jernigan, Z. Wu, G. Song, L. Yang,
A. Kolinski, P. Pokarowski,
Distance matrix-based approach to protein structure prediction.
Journal of Structural and Functional Genomics, 10(1), 67-81, 2009.
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A. Gambin, P. Krzyzanowski and P. Pokarowski,
Aggregation Algorithms for Perturbed Markov Chains with Applications
to Networks Modeling.
SIAM Journal on Scientific Computing, 31(1), 45-73, 2008.
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S. Kawashima, P. Pokarowski, M. Pokarowska, A. Kolinski, T. Katayama
and M. Kanehisa,
AAindex: amino acid index database, progress report 2008.
Nucleic Acids Research 36 (Suppl.1), D202-D205, 2008.
AAindex database
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P. Pokarowski, A. Kloczkowski, S. Nowakowski, M. Pokarowska,
R. L. Jernigan and A. Kolinski,
Ideal amino acid exchange forms for approximating substitution matrices.
Proteins: Structure, Function and Bioinformatics, 69, 379-393, 2007.
Supplemental Material
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P. Pokarowski, K. Droste and A. Kolinski,
A minimal protein-like lattice model: an alpha-helix motif.
Journal of Chemical Physics, 122, art. no. 214915, 1-6, 2005.
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P. Pokarowski, A. Kloczkowski, R. L. Jernigan, N. Kothari,
M. Pokarowska and A. Kolinski,
Inferring ideal amino acid interaction forms from statistical
protein contact potentials.
Proteins: Structure, Function and Bioinformatics, 59(1), 49-57, 2005.
Supplemental Material
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A. Kolinski, D. Gront, P. Pokarowski and J. Skolnick,
A simple lattice model that exhibits a protein-like
cooperative all-or-none folding transition.
Biopolymers, 69(3), 399-405, 2003.
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P. Pokarowski, A. Kolinski and J. Skolnick,
A minimal physically realistic protein-like lattice model:
Designing an energy landscape that ensures all-or-none
folding to a unique native state.
Biophysical Journal, 84(3), 1518-1526, 2003.
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A. Gambin and P. Pokarowski,
A new combinatorial algorithm for large Markov chains.
Computer Algebra in Scientific Computing - CASC 2001, V.G. Ghanza, E.W. Mayr,
E.V. Vorozthsov (Eds.), Springer, Berlin 2001, pp. 195-212.
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A. Gambin and P. Pokarowski,
A combinatorial aggregation algorithm for computing stationary
distributions of large Markov chains. Fundamentals of Computation
Theory 13th International Symposium - FCT 2001, R. Freivalds (Ed.),
Springer LNCS 2138, 2001, pp. 384-388.
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J. Jachymski, L. Gajek and P. Pokarowski,
The Tarski-Kantorovitch principle and the theory of iterated
function systems.
Bulletin of the Australian Mathematical Society, 61, 247-261, 2000.
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A. Kierzek, P. Pokarowski and P. Zielenkiewicz,
Microscopic model of protein crystal growth.
Biophysical Chemistry, 87(1), 43-61, 2000.
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A. Kierzek, P. Pokarowski and P. Zielenkiewicz,
Lattice simulation of protein crystal formation.
Biophysical Chemistry, 77, 123-137, 1999.
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P. Pokarowski,
Directed forests with applications to algorithms related
to Markov chains.
Applicationes Mathematicae, 26(4), 395-414, 1999.
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P. Pokarowski,
Directed forests and algorithms related to Markov chains (in Polish).
PhD thesis, Institute of Mathematics of the Polish Academy of Sciences, 1998.
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P. Pokarowski,
Uncoupling measures and eigenvalues of stochastic matrices.
Journal of Applied Analysis, 4(2), 261-269, 1998.
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W. Niemiro and P. Pokarowski,
Tail events of some nonhomogeneous Markov chains.
Annals of Applied Probability, 5(1), 261-293, 1995.