About Me

Research Directions
Computational medicine and molecular biology, machine learning for cancer research, spatially-resolved data modelling, -omics data integration.

Current Work

  • Medical image modeling and analysis in the context of infiltration patterns of immune cells within IMMUcan consortium together with Ewa Szczurek Lab
  • Human chromosome 2 fusion event and its evolutionary origins together with Anna Gambin and Pawel Stankiewicz Labs (see the recent article in Genome Biology)

News

Sep 14, 2024: It's been an amazing week at Ascona Workshop: Spatial and temporal statistical modeling in molecular biology. Hopefully some new collaborations will emerge soon!
May 23, 2024: My proposal Computational methods for understanding tumor immune microenvironment from spatial imaging data was selected for funding in the SONATA 19 call by National Science Centre Poland!
Apr 11, 2024: Networking and presenting poster at Munich Health Foundation Model Syposium by Helmholtz Munich -- seems like Foundation Models may be leading solutions in biomed research soon.
Sep 30, 2023: It has been an amazing semester - three master theses related to tumor microenvironment modeling were defended. Amazing work guys!
Jun 03, 2023: Final article within COVID-19 epidemiology research published in eLife, a collaboration of European modeling teams.
Oct 31, 2022: Our collaboration with German institues resulted in the next paper: Short-term forecasting of COVID-19 in Germany and Poland during early 2021 has been published in Communications Medicine.
Aug 30, 2022: Revised time estimation of the ancestral human chromosome 2 fusion published in BMC Genomics.
Jul 25, 2022: Research paper on Case Fatality Rate in Poland during the first SARS-CoV-2 lineage published in Methods.
Jul 06, 2022: TADEUS2 - a web server for clinical diagnosis based on structural variations in the human genome had been published by Nucleic Acid Research An amazing work of the first author Basia Poszewiecka!
Mar 03, 2022: Our model to predict the effect of introducing the vaccination passess is now out in Communications Medicine