Wydział Matematyki, Informatyki i Mechaniki Uniwersytetu Warszawskiego
Publikacje
Jerzy Tiuryn
2016
- Bartosz Wilczyński i Jerzy Tiuryn, FastBill: An Improved Tool for Prediction of Cis-Regulatory Modules, Journal Of Computational Biology 2016.zobacz w PBN
- Aleksander Jankowski, Paulina Obara, Utsav Mathur i Jerzy Tiuryn, Enhanceosome transcription factors preferentially dimerize with high mobility group proteins, Bmc Systems Biology 10 2016, s. 14.zobacz w PBN
- Aleksander Jankowski, Jerzy Tiuryn i Shyam Prabhakar, Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data, Bioinformatics 32 (16) 2016, s. 2419–2426.zobacz w PBN
2015
- Kinga Rutowicz, Marcin Puzio, Joanna Halibart-Puzio, Maciej Lirski, Maciej Kotliński, Magdalena Kroteń, Łukasz Kniżewski, Bartosz Lange, Anna Muszewska, Katarzyna Śniegowska-Świerk, Janusz Kościelak, Roksana Iwanicka-Nowicka, Krisztian Buza, Franciszek Janowiak, Katarzyna Żmuda, Jõesaar Indrek, Katarzyna Laskowska-Kaszub, Anna Fogtman, Hannes Kollist, Piotr Zielenkiewicz, Jerzy Tiuryn, Paweł Siedlecki, Szymon Świeżewski, Krzysztof Ginalski, Marta Koblowska, Rafał Archacki, Bartosz Wilczyński, Marcin Rapacz i Andrzej Jerzmanowski, A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis., Plant Physiology 169 (3) 2015, s. 2080–2101.zobacz w PBN
2014
- Aleksander Jankowski, Shyam Prabhakar i Jerzy Tiuryn, TACO: a general-purpose tool for predicting cell-type–specific transcription factor dimers, Bmc Genomics 15 (1) 2014, s. 208.zobacz w PBN
- MICHAŁ WOŹNIAK, Limsoon Wong i Jerzy Tiuryn, eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains, Bmc Bioinformatics 15 (65) 2014.zobacz w PBN
- Ryszard Rudnicki i Jerzy Tiuryn, Size distribution of gene families in a genome, Mathematical Models & Methods In Applied Sciences 24 (4) 2014, s. 697–717.zobacz w PBN
- Michał Woźniak, Jerzy Tiuryn i Limsoon Wong, GWAMAR: Genome-wide assessment of mutations associated with drug resistance in bacteria, Bmc Genomics 15 (Suppl 10) 2014, s. S10.zobacz w PBN
2013
- Aleksander Jankowski, Ewa Szczurek, Ralf Jauch, Jerzy Tiuryn i Shyam Prabhakar, Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers, Genome Research 23 (8) 2013, s. 1307–1318.zobacz w PBN
- Paweł Górecki, Oliver Eulenstein i Jerzy Tiuryn, Unrooted Tree Reconciliation: A Unified Approach, Ieee-acm Transactions On Computational Biology And Bioinformatics 10 (2) 2013, s. 522–536.zobacz w PBN
- Janusz Bujnicki i Jerzy Tiuryn, Bioinformatics and computational biology in Poland, Plos Computational Biology 2013.zobacz w PBN
- Janusz Józef Dutkowski i Jerzy Tiuryn, A probabilistic model of neutral and selective dynamics of protein network evolution, Journal Of Computational Biology 20 (9) 2013, s. 631–642.zobacz w PBN
2012
- Paweł Górecki i Jerzy Tiuryn, Inferring Evolutionary Scenarios in the Duplication, Loss and Horizontal Gene Transfer Model, Lecture Notes In Computer Science 7230 2012, s. 83–105.zobacz w PBN
- Przemysław Biecek, Ewa Szczurek, Martin Vingron i Jerzy Tiuryn, The R Package bgmm: Mixture Modeling with Uncertain Knowledge, Journal Of Statistical Software 47 (3) 2012, s. 1–31.zobacz w PBN
- Michał Woźniak, Jerzy Tiuryn i Limsoon Wong, An approach to identifying drug resistance associated mutations in bacterial strains, Bmc Genomics 13 (Suppl. 7):S2 2012.zobacz w PBN
2011
- Maciej Jończyk, Alicja Sobkowiak, Paweł Siedlecki, Przemysław Biecek, Joanna Trzcińska-Danielewicz, Jerzy Tiuryn, Jan Fronk i Paweł Sowiński, Rhythmic diel pattern of gene expression in juvenile maize leaf, Plos One 2011, s. 1.zobacz w PBN
- Norbert Dojer, Przemysław Biecek i Jerzy Tiuryn, Bi-Billboard: Symmetrization and Careful Choice of Informant Species Results in Higher Accuracy of Regulatory Element Prediction, Journal Of Computational Biology 18 (6) 2011, s. 809–819.zobacz w PBN
- Ewa Szczurek, Florian Markowetz, Irit Gat-Viks, Przemysław Biecek, Jerzy Tiuryn i Martin Vingron, Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data, Bmc Bioinformatics 12 2011, s. 1–19.zobacz w PBN
- Michał Woźniak, L. Wong i Jerzy Tiuryn, CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains, Bioinformatics 27 (23) 2011, s. 3313–3314.zobacz w PBN
- Michał Woźniak, L. Wong i Jerzy Tiuryn, CAMBer: an approach to support comparative analysis of multiple bacterial strains, Bmc Genomics 12 (2) 2011, s. 6.zobacz w PBN
2009
- Bartosz Wilczyński, Norbert Dojer, Mateusz Patelak i Jerzy Tiuryn, Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs, Bmc Bioinformatics 10 2009, s. 82.zobacz w PBN
- Janusz Dutkowski i Jerzy Tiuryn, Phylogeny-guided interaction mapping in seven eukaryotes, Bmc Bioinformatics 10 2009, s. 393.zobacz w PBN
- Ewa Szczurek, Irit Gat-Viks, Jerzy Tiuryn i Martin Vingron, Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments, Molecular Systems Biology 10 2009, s. 82.zobacz w PBN
2007
- Paweł Górecki i Jerzy Tiuryn, Inferring phylogeny from whole genomes, Bioinformatics 23 2007, s. 116–122.zobacz w PBN
- Janusz Dutkowski i Jerzy Tiuryn, Identification of functional modules from conserved ancestral protein-protein interactions, Bioinformatics 23 2007, s. 149–158.zobacz w PBN
- Bartek Wilczyński i Jerzy Tiuryn, Reconstruction of Mammalian Cell Cycle Regulatory Network from Microarray Data using Stochastic Logical Networks, Lecture Notes In Computer Science 4695 2007, s. 121–135.zobacz w PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, Krzysztof Kowalczyk, Jerzy Ostrowski, Jarosław Poznański, Jerzy Tiuryn, Magda Bakun i Michał Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2007, s. 20–30.zobacz w PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, Krzysztof Kowalczyk, Jerzy Ostrowski, Jarosław Poznański, Jerzy Tiuryn, M. Bakun i Michał Lech Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2007, s. 20–30.zobacz w PBN
- Michał Drabikowski, Szymon Nowakowski i Jerzy Tiuryn, Library of Local Descriptors Models the Core of Proteins Accurately, Proteins-structure Function And Bioinformatics 69 (3) 2007, s. 499–510.zobacz w PBN
- Jerzy Tiuryn i Damian Wójtowicz, Evolution of gene families based on gene duplication, loss, accumulated change, and innovation, Journal Of Computational Biology 14 (4) 2007, s. 479–495.zobacz w PBN
- Jerzy Tiuryn, Damian Wójtowicz i Ryszard Rudnicki, A Discrete Model of Evolution of Small Paralog Families, Mathematical Models & Methods In Applied Sciences 17 (6) 2007, s. 933–956.zobacz w PBN
- Paweł Górecki i Jerzy Tiuryn, URec: a system for unrooted reconciliation, Bioinformatics 23 (4) 2007, s. 511–512.zobacz w PBN
2006
- Anna Gambin, K. Bożek, Bartosz Wilczynski i Jerzy Tiuryn, Automated modeling of genetic control in Arabidopsis thaliana, Journal Of Fruit And Ornamental Plant Research 14 2006, s. 163–171.zobacz w PBN
- Anna Gambin, Jerzy Tiuryn i Jerzy Tyszkiewicz, Alignment with context dependent scoring function, Journal Of Computational Biology 13 (1) 2006, s. 81–101.zobacz w PBN
- Norbert Dojer, Anna Gambin, A. Mizera, Bartosz Wilczyński i Jerzy Tiuryn, Applying Dynamic Bayesian Networks to Perturbed Gene Expression Data, Bmc Bioinformatics 7 2006, s. 249.zobacz w PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, K. Kowalczyk, J. Ostrowski, J. Poznanski, Jerzy Tiuryn, M. Bakun i M. Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 (1) 2006, s. 20–30.zobacz w PBN
- Ryszard Rudnicki, Jerzy Tiuryn i Damian Wójtowicz, A model for the evolution of paralog families in genomes, Journal Of Mathematical Biology 53 (5) 2006, s. 759–770.zobacz w PBN
- Paweł Górecki i Jerzy Tiuryn, DLS-trees: a model of evolutionary scenarios, Theoretical Computer Science 359 (1-3) 2006, s. 378–399.zobacz w PBN
- Damian Wójtowicz i Jerzy Tiuryn, On genome evolution with accumulated change and innovation, Lecture Notes In Computer Science 4205 2006, s. 40–50.zobacz w PBN
- Damian Wójtowicz i Jerzy Tiuryn, On genome evolution with innovation, Lecture Notes In Computer Science 4162 2006, s. 801–811.zobacz w PBN
- Bartek Wilczyński i Jerzy Tiuryn, Regulatory Network Reconstruction using Stochastic Logical Networks, Lecture Notes In Computer Science 4210 2006, s. 142–154.zobacz w PBN
- Katarzyna Bozek, Anna Gambin, Bartosz Wilczyński i Jerzy Tiuryn, Automated modelling of genetic control in Arabidopsis thaliana, Journal Of Fruit And Ornamental Plant Research 14 2006.zobacz w PBN
- Bartek Wilczyński, Tr. Hvidsten, A. Kryshtafovych, Jerzy Tiuryn, J. Komorowski i K. Fidelis, Using local gene expression similarities to discover regulatory binding site modules, Bmc Bioinformatics 7 2006, s. 505.zobacz w PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, K. Kowalczyk, J Ostrowski, Jarosław Poznański, Jerzy Tiuryn, M. Bakun i Michał Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2006, s. 20–30.zobacz w PBN
2005
- T. Hvidsten, B. Wilczyński, A. Kryshtafovych, Jerzy Tiuryn, J. Komorowski i K. Fidelis, Discovering regulatory binding site modules using rule-based learning, Genome Research 15 2005, s. 856–866.zobacz w PBN
- Michał Drabikowski, Krzysztof Fidelis, Andriy Kryshtafovych i Jerzy Tiuryn, Local Descriptors' Library Models the Core of Protein Structures Accurately, w: RECOMB 2005 Poster Abstracts, Ź
Broad Institute of MIT and Harvard Ź, Boston USA 2005.zobacz w PBN
2004
- Viviana Bono, Jerzy Tiuryn i Paweł Urzyczyn, Type inference for nested self types, Lecture Notes In Computer Science 3085 2004, s. 99–114.zobacz w PBN
- Jerzy Tiuryn, Ryszard Rudnicki i Damian Wójtowicz, A Case Study of Genome Evolution: From Continuous to Discrete Time Model, Lecture Notes In Computer Science 3153 2004, s. 1–24.zobacz w PBN
- Paweł Górecki i Jerzy Tiuryn, On the structure of reconciliations, Lecture Notes In Computer Science 3388 2004, s. 42–54.zobacz w PBN
- Jerzy Tiuryn i Damian Wójtowicz, A Markovian model of genome evolution: distribution of paralogs, w: RECOMB 2004, Currents in Computational Molecular Biology, University of California at San Diego, San Diego 2004.zobacz w PBN
2003
- Szymon Nowakowski, Andriey Kryshtafovych, Krzysztof Fidelis i Jerzy Tiuryn, Detecting Local Structure in proteins by Analyzing Motif Sequence Signatures, w: Proceedings of the European Conference on Computational Biology in Conjunction with the French National Conference on Bioinformatics, Paris 2003.zobacz w PBN
- Dexter Kozen i Jerzy Tiuryn, Substructural Logic and Partial Correctness, w: ACM Transactions on Computational Logic, New York 2003.zobacz w PBN
- Agnes Szczepek, Jerzy Tiuryn i Bartosz Wilczynski, Designing DNA-microarray Probes Opimized for Hybridization Probability, w: Currents in Computtaional Molecular Biology (RECOMB), Berlin 2003.zobacz w PBN
- Dexter Kozen i Jerzy Tiuryn, Substructural Logic and Partial Correctness, Acm Transactions On Computational Logic 4 (3) 2003, s. 355–378.zobacz w PBN
2002
- Jerzy Tiuryn i Paweł Urzyczyn, The subtyping problem for second-order types is undecidable, Information And Computation 179 2002, s. 1–18.zobacz w PBN
- Jerzy Tiuryn i Viviana Bono, Products and Polymorphic Subtypes, Fundamenta Informaticae 51 (1,2) 2002, s. 13–41.zobacz w PBN
- Anna Gambin, Sławomir Lasota, Radosław Szklarczyk, Jerzy Tiuryn i Jerzy Tyszkiewicz, Contextual Alignment of Biological Sequences, Bioinformatics 18 (2) 2002, s. 116–127.zobacz w PBN
- Jerzy Tiuryn, Hoare logic: from first-order to propositional formalism, w: Proofs and System-Reliability, Kluwer Academic Publishers, Dordrecht 2002.zobacz w PBN
- V. Bono i J. Tiuryn, Products and Polymorphic Subtypes, Fundamenta Informaticae Vol. 51, nr 1,2 2002, s. 13–41.zobacz w PBN
2000
- Jerzy Tiuryn i D Kozen, On the completeness of propositional Hoare Logic, w: 5th Int. Seminar Relational Methods in Computer Science, Universite Laval, Quebec, Canada 2000.zobacz w PBN
- Jerzy Tiuryn, Dexter Kozen i David Harel, Dynamic Logic, The MIT Press, Cambridge, MA 2000.zobacz w PBN
- Jerzy Tiuryn (red.), Proc. Foundations of Software Science and Computation Structures, Springer Verlag, Berlin 2000.zobacz w PBN
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