Wydział Matematyki, Informatyki i Mechaniki Uniwersytetu Warszawskiego
Publikacje
Anna Gambin
2019
- Wojciech Jaworski, Sara Szymkuć, Barbara Mikulak-Klucznik, Krzysztof Piecuch, Tomasz Klucznik, Michal Kazmierowski, Jan Rydzewski, Anna Gambin i Bartosz Grzybowski, Automatic mapping of atoms across both simple and complex chemical reactions, Nature Communications 10 (1) 2019, s. 1434.zobacz w PBN
- Grzegorz Dudziuk, Weronika Wronowska, Anna Gambin, Zuzanna Szymańska i Mikołaj Jakub Rybiński, Biologically sound formal model of Hsp70 heat induction, Journal Of Theoretical Biology 478 (7) 2019, s. 74–101.zobacz w PBN
- Mateusz Krzysztof Łącki, Frederik Lermyte, Błażej Miasojedow, Michał Startek, Frank Sobott, Dirk Valkenborg i Anna Gambin, masstodon: A tool for assigning peaks and modeling electron transfer reactions in top-down mass spectrometry, Analytical Chemistry 0 (ja) 2019, s. null.zobacz w PBN
- Victor Murcia Pienkowski, Marzena Kucharczyk, Marlena Młynek, Krzysztof Szczałuba, Małgorzata Rydzanicz, Barbara Poszewiecka, Agata Skórka, Maciej Sykulski, Anna Biernacka, Agnieszka Koppolu, Renata Posmyk, Anna Walczak, Joanna Kosińska, Paweł Krajewski, Jennifer Castaneda, Ewa Obersztyn, Elżbieta Jurkiewicz, Robert Śmigiel, Anna Gambin, Krystyna Chrzanowska, Małgorzata Krajewska-Walasek i Rafał Płoski, Mapping of breakpoints in balanced chromosomal translocations by shallow whole genome sequencing points to EFNA5, BAHD1 and PPP2R5E as novel candidates for genes causing human Mendelian disorders, Journal Of Medical Genetics 2019.zobacz w PBN
2018
- P. Szafranski, E. Ko?mider, Q. Liu, J. A. Karolak, L. Currie, S. Parkash, S. G. Kahler, E. Roeder, R. O. Littlejohn, T. S. DeNapoli, F. R. Shardonofsky, C. Henderson, G. Powers, V. Poisson, D. Berube, L. Oligny, J. L. Michaud, S. Janssens, K. De Coen, J. Van Dorpe, A. Dheedene, M. T. Harting, M. D. Weaver, A. M. Khan, N. Tatevian, J. Wambach, K. A. Gibbs, E. Popek, Anna Gambin i Paweł Stankiewicz, LINE- and Alu-containing genomic instability hotspot at 16q24.1 associated with recurrent and nonrecurrent CNV deletions causative for ACDMPV, Human Mutation 39 (12) 2018, s. 1916–1925.zobacz w PBN
- Szymon Majewski, Michał Ciach, Michał Startek, Wanda Niemyska, Błażej Miasojedow i Anna Gambin, The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra with Application to Spectral Deconvolution, w: 18th International Workshop on Algorithms in Bioinformatics (WABI 2018), 2018, s. 25:1–25:21.zobacz w PBN
- Barbara Poszewiecka, Paweł Stankiewicz, Tomasz Gambin i Anna Gambin, TADeus-a tool for clinical interpretation of structural variants modifying chromatin organization, w: 2018 IEEE International Conference on Bioinformatics and Biomedicine, 2018, s. 84–87.zobacz w PBN
- Krzysztof Gogolewski, Marcin Kostecki i Anna Gambin, Renal cell carcinoma classification: a case study of pitfalls associated with metabolic landscape analysis, w: 2018 IEEE International Conference on Bioinformatics and Biomedicine, 2018, s. 96–101.zobacz w PBN
- Krzysztof Gogolewski, Maciej Sykulski, Neo Christopher Chung i Anna Gambin, Truncated Robust Principal Component Analysis and Noise Reduction for Single Cell RNA-seq Data, w: International Symposium on Bioinformatics Research and Applications (ISBRA), 2018, s. 335–346.zobacz w PBN
- Krzysztof Gogolewski i Anna Gambin, PCA-like Methods for the Integration of Single Cell RNA-seq Data with Metabolic Networks, w: 2018 IEEE 8th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2018, s. 1–1.zobacz w PBN
- Anna Gambin i Monika Heiner, Advances in Biological processes and Petri nets (BioPPN) Preface, Fundamenta Informaticae 2018.zobacz w PBN
2017
- Grzegorz Skoraczyński, Piotr Dittwald, Błażej Miasojedow, Sara Szymkuć, Ewa Gajewska, Bartosz Grzybowski i Anna Gambin, Predicting the outcomes of organic reactions via machine learning: are current descriptors sufficient?, Scientific Reports Of The Nature Publishing Group 7 (1) 2017.zobacz w PBN
- Mateusz K Łącki, Michał Startek, Dirk Valkenborg i Anna Gambin, IsoSpec: Hyperfast Fine Structure Calculator, Analytical Chemistry 89 (6) 2017, s. 3272–3277.zobacz w PBN
- Michał Startek, Jakub Nogły, Agnieszka Gromadka, Dariusz Grzebelus i Anna Gambin, Inferring transposons activity chronology by TRANScendence -- TEs database and de-novo mining tool, Bmc Bioinformatics 18 (12) 2017, s. 422.zobacz w PBN
- Krzysztof Gogolewski, Weronika Wronowska, Agnieszka Lech, Bogdan Lesyng i Anna Gambin, Inferring Molecular Processes Heterogeneity from Transcriptional Data, Biomed Research International (journal Of Biomedicine And Biotechnology) 2017 2017, s. 6961786.zobacz w PBN
- L. W. Bielczynski, Mateusz Łącki, I. Hoefnagels, Anna Gambin i R. Croce, Leaf and Plant Age Affects Photosynthetic Performance and Photoprotective Capacity, Plant Physiology 175 (4) 2017, s. 1634–1648.zobacz w PBN
- M. A. Ciach, Mateusz Łącki, Błażej Miasojedow, F. Lermyte, D. Valkenborg, F. Sobott i Anna Gambin, Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry, Journal Of Computational Biology 2017.zobacz w PBN
2016
- Miao Zhang, Charles Guo, Tadeusz Majewski, Vipulkumar Dadhania, Maciej Sykulski, Weronika Wronowska, Woonyoung Choi, David McConkey, Colin Dinney i Anna Gambin, Immunohistochemical Profiles of Molecular Subtypes of Bladder Cancer, w: LABORATORY INVESTIGATION, 2016, s. 270A–270A.zobacz w PBN
- A. V. Dharmadhikari, J. J. Sun, Krzysztof Gogolewski, B. L. Carofino, V. Ustiyan, M. Hill, T. Majewski, P. Szafranski, M. J. Justice, R. S. Ray, M. E. Dickinson, V. V. Kalinichenko, Anna Gambin i P. Stankiewicz, Lethal lung hypoplasia and vascular defects in mice with conditional Foxf1 overexpression, Biology Open 5 (11) 2016, s. 1595–1606.zobacz w PBN
- F. Lermyte, M. K. ??cki, D. Valkenborg, Anna Gambin i F. Sobott, Conformational Space and Stability of ETD Charge Reduction Products of Ubiquitin, Journal Of The American Society For Mass Spectrometry 2016.zobacz w PBN
- C. C. Guo, V. Dadhania, L. Zhang, T. Majewski, J. Bondaruk, M. Sykulski, W. Wronowska, Anna Gambin, Y. Wang, S. Zhang, E. Fuentes-Mattei, A. M. Kamat, C. Dinney, A. Siefker-Radtke, W. Choi, K. A. Baggerly, D. McConkey, J. N. Weinstein i B. Czerniak, Gene Expression Profile of the Clinically Aggressive Micropapillary Variant of Bladder Cancer, European Urology 70 (4) 2016, s. 611–620.zobacz w PBN
- Charles C Guo, Vipulkumar Dadhania, Li Zhang, Jolanta Bondaruk, Tadeusz Majewski, Maciej Sykulski, Weronika Wronowska, Anna Gambin, Ashish Kamat i Colin Dinney, Molecular Characterization of Clinically Aggressive Micropapillary Bladder Cancer, w: LABORATORY INVESTIGATION, 2016, s. 235A–235A.zobacz w PBN
2015
- Michał Startek, Przemyslaw Szafranski, Tomasz Gambin, Ian M. Campbell, Patricia Hixson, Chad A. Shaw, Paweł Stankiewicz i Anna Gambin, Genome-wide analyses of LINE–LINE-mediated nonallelic homologous recombination, Nucleic Acids Research 2015.zobacz w PBN
- Weronika Wronowska, Agata Charzynska, Karol Nienałtowski i Anna Gambin, Computational modeling of sphingolipid metabolism, Bmc Systems Biology 9 2015, s. 47.zobacz w PBN
- Krzysztof Stawujak, Michał Startek, Anna Gambin i Dariusz Grzebelus, MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula, Genetica 143 (4) 2015, s. 433–440.zobacz w PBN
- Piotr Dittwald, D. Valkenborg, J. Claesen, A. L. Rockwood i Anna Gambin, On the Fine Isotopic Distribution and Limits to Resolution in Mass Spectrometry, Journal Of The American Society For Mass Spectrometry 26 (10) 2015, s. 1732–1745.zobacz w PBN
- Frederik Lermyte, Mateusz Krzysztof Łącki, Dirk Valkenborg, Geert Baggerman, Anna Gambin i Frank Sobott, Understanding reaction pathways in top-down ETD by dissecting isotope distributions: A mammoth task, International Journal Of Mass Spectrometry 390 2015, s. 146–154.zobacz w PBN
- Agata Charzyńska i Anna Gambin, Improvement of the k-nn Entropy Estimator with Applications in Systems Biology, Entropy 18 (1) 2015, s. 13.zobacz w PBN
2014
- Piotr Dittwald, V. T. Nghia, G. A. Harris, R. M. Caprioli, R. Van de Plas, K. Laukens, Anna Gambin i D. Valkenborg, Towards automated discrimination of lipids versus peptides from full scan mass spectra, Eupa Open Proteomics 4 2014, s. 87–100.zobacz w PBN
- I. M. Campbell, Tomasz Gambin, Piotr Dittwald, C. R. Beck, A. Shuvarikov, P. Hixson, A. Patel, Anna Gambin, C. A. Shaw, J. A. Rosenfeld i P. Stankiewicz, Human endogenous retroviral elements promote genome instability via non-allelic homologous recombination, Bmc Biology 12 2014, s. 74.zobacz w PBN
- P. Sen, A. V. Dharmadhikari, T. Majewski, M. A. Mohammad, T. V. Kalin, J. Zabielska, X. Ren, M. Bray, H. M. Brown, S. Welty, S. Thevananther, C. Langston, P. Szafranski, M. J. Justice, V. V. Kalinichenko, Anna Gambin, J. Belmont i Paweł Stankiewicz, Comparative analyses of lung transcriptomes in patients with alveolar capillary dysplasia with misalignment of pulmonary veins and in foxf1 heterozygous knockout mice, Plos One 9 (4) 2014, s. e94390.zobacz w PBN
- Magdalena Bartnik, Beata Nowakowska, Katarzyna Derwińska, Barbara Wiśniowiecka-Kowalnik, Marta Kędzior, Joanna Bernaciak, Kamila Ziemkiewicz, Anna Gambin, Maciej Sykulski, Natalia Bezniakow, Lech Korniszewski, Anna Dorota Kutkowska-Kaźmierczak, Jakub Klapecki, Krzysztof Szczałuba, C. A. Shaw, Tadeusz Mazurczak, Anna Gambin, Ewa Obersztyn, Ewa Bocian i Paweł Stankiewicz, Application of array comparative genomic hybridization in 256 patients with developmental delay or intellectual disability, Journal Of Applied Genetics 55 (1) 2014, s. 125–144.zobacz w PBN
- T. Jetka, A. Charzyńska, Anna Gambin, M. P. Stumpf i Michał Komorowski, StochDecomp--Matlab package for noise decomposition in stochastic biochemical systems, Bioinformatics 30 (1) 2014, s. 137–138.zobacz w PBN
- A. V. Dharmadhikari, Tomasz Gambin, P. Szafranski, W. Cao, F. J. Probst, W. Jin, P. Fang, K. Gogolewski, Anna Gambin, J. K. George-Abraham, S. Golla, F. Boidein, B. Duban-Bedu, B. Delobel, J. Andrieux, K. Becker, E. Holinski-Feder, S. Cheung i P. Stankiewicz, Molecular and clinical analyses of 16q24.1 duplications involving FOXF1 identify an evolutionarily unstable large minisatellite, Bmc Medical Genetics 15 (1) 2014, s. 128.zobacz w PBN
2013
- Tomasz Gambin, Paweł Stankiewicz, Maciej Sykulski i Anna Gambin, Functional performance of aCGH design for clinical cytogenetics, Computers In Biology And Medicine 43 2013, s. 775–785.zobacz w PBN
- Anna Gambin, Agata Charzyńska, Aleksandra Ellert-Miklaszewska i Mikołaj Rybiński, Computational models of the JAK1/2-STAT1 signaling., Jak-stat 2 (3) 2013, s. e24672.zobacz w PBN
- Piotr Dittwald, Jurgen Claesen, Tomasz Burzykowski, Dirk Valkenborg i Anna Gambin, BRAIN: A Universal Tool for High-Throughput Calculations of the Isotopic Distribution for Mass Spectrometry, Analytical Chemistry 2013, s. 1991–1994.zobacz w PBN
- Piotr Dittwald, Tomasz Gambin, P. Szafranski, J. Li, S. Amato, M. Y. Divon, L. X. Rodriguez Rojas, L. E. Elton, D. A. Scott, C. P. Schaaf, W. Torres-Martinez, A. K. Stevens, J. A. Rosenfeld, S. Agadi, D. Francis, S. H. Kang, A. Breman, S. R. Lalani, C. A. Bacino, W. Bi, A. Milosavljevic, A. L. Beaudet, A. Patel, C. A. Shaw, J. R. Lupski, Anna Gambin, S. W. Cheung i Paweł Stankiewicz, NAHR-mediated copy-number variants in a clinical population: mechanistic insights into both genomic disorders and Mendelizing traits, Genome Research 23 (9) 2013, s. 1395–1409.zobacz w PBN
- Michał Startek, Jarosław Paszek, Tomasz Gambin, Krzysztof Walczak, Dariusz Grzebelus i Anna Gambin, TIRfinder: A Web Tool for Mining Class II Transposons Carrying Terminal Inverted Repeats, Evolutionary Bioinformatics 9 2013, s. 17–27.zobacz w PBN
- Mikołaj Jakub Rybiński, Zuzanna Szymańska, Sławomir Lasota i Anna Gambin, Modelling the efficacy of hyperthermia treatment, Journal Of The Royal Society Interface 10 (88) 2013, s. 1–10.zobacz w PBN
- Claudia Carvalho, Piotr Dittwald, Tomasz Gambin, Claudia Gonzaga-Jauregui, James Lupski, Paweł Stankiewicz i Anna Gambin, Inverted Low-Copy Repeats and Genome Instability, Human Mutation 34 (1) 2013, s. 210–220.zobacz w PBN
- Michał Startek, Arnaud Le Rouzic, Pierre Capy, Dariusz Grzebelus i Anna Gambin, Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations, Theoretical Population Biology 90 (Complete) 2013, s. 145–151.zobacz w PBN
- Anna Gambin, J. Li, R.A. Harris, S.W. Cheung, C. Coarfa, M. Jeong, M.A. Goodell, L.D. White, A. Patel, S. H. Kang, C. Shaw, A.C. Chinault, Tomasz Gambin, J.R. Lupski i A. Milosavlevic, Confounding by Repetitive Elements and CpG Islands Does Not Explain the Association between Hypomethylation and Genomic Instability, Plos Genetics 9 (2) 2013.zobacz w PBN
- Marta Smyk, Przemyslaw Szafranski, Michał Startek, Anna Gambin i Paweł Stankiewicz, Chromosome conformation capture-on-chip analysis of long-range cis-interactions of the SOX9 promoter, Chromosome Research 21 (8) 2013, s. 781–788.zobacz w PBN
2012
- Anna Gambin i Mikołaj Rybiński, Model-based selection of the robust JAK-STAT activation mechanism, Journal Of Theoretical Biology 309 2012, s. 34–46.zobacz w PBN
- Michał Startek, Sławomir Lasota, Maciej Sykulski, A. Bułak, L. Noé, G. Kucherov i Anna Gambin, Efficient alternatives to PSI-BLAST, Bulletin Of The Polish Academy Of Sciences-technical Sciences Vol. 60, nr 3 2012, s. 495–505.zobacz w PBN
- Anna Gambin, Anna Marciniak-Czochra i Damian Niwiński, Alan Turing and Systems Biology, Ercim News 2012 (91) 2012.zobacz w PBN
- Anna Gambin, Magdalena Bartnik, Elżbieta Szczepanik, Katarzyna Derwińska, Barbara Wiśniowiecka-Kowalnik, T. Gambin, Maciej Sykulski, K. Ziemkiewicz, Paweł Stankiewicz, Ewa Obersztyn, Ewa Bocian, Tadeusz Mazurczak, Hanna Mierzejewska, C.A. Shaw, M. Sobirajewicz, Iwona Terczyńska, Marta Kędzior, Monika Gos, Dorota Hoffman-Zacharska, A. Jeziorek, Dorota Antczak-Marach, M. Rudzka-Dybała, H. Mazurkiewicz, A. Goszczańska-Ciuchta i T. Zalewska-Miszkurka, Application of array comparative genomic hybridization in 102 patients with epilepsy and additional neurodevelopmental disorders, American Journal Of Medical Genetics Part B-neuropsychiatric Genetics 159B (6) 2012.zobacz w PBN
- Barbara Wiśniowiecka-Kowalnik, Monika Kastory-Bronowska, Magdalena Bartnik, Katarzyna Derwińska, Wanda Dymczak-Domini, Dorota Szumbarska, Ewa Ziemka, Krzysztof Szczałuba, Maciej Sykulski, Tomasz Gambin, Anna Gambin, Chad Shaw, Tadeusz Mazurczak, Ewa Obersztyn, Ewa Bocian i Paweł Stankiewicz, Application of custom-designed oligonucleotide array CGH in 145 patients with autistic spectrum disorders, European Journal Of Human Genetics 1 (6) 2012, s. 620–625.zobacz w PBN
- Anna Gambin, J. Li, R.A. Harris, S.W. Cheung, C. Coarfa, R.A. Lupski, M. Jeong, L. D. White, M.A. Goodell, S. H. Kang, C. Shaw, A. Patel, T. Gambin, A.C. Chinault i A. Milosavljevic, Genomic hypomethylation in the human germline associates with selective structural mutability in the human genome, Plos Genetics 8 (5) 2012.zobacz w PBN
- Agata Charzyńska, Anna Nałęcz, Mikołaj Jakub Rybiński i Anna Gambin, Sensitivity analysis of mathematical models of signaling pathways, Biotechnologia 93 (3) 2012, s. 291–308.zobacz w PBN
- Anna Gambin, Piotr Dittwald, Jerzy Ostrowski i Jakub Karczmarski, Inferring serum proteolytic activity from LC-MS/MS data, Bmc Bioinformatics 13 (5) 2012.zobacz w PBN
- Paweł Banasik, Anna Gambin, Sławomir Lasota, Michał Lula i Mikołaj Rybiński, Tav4SB: integrating tools for analysis of kinetic models of biological systems, Bmc Systems Biology 6 (25) 2012.zobacz w PBN
- Michał Startek, Sławomir Lasota, Maciej Sykulski, Adam Bułak, Laurent Noe, Gregory Kucherov i Anna Gambin, Efficient alternatives to PSI-BLAST, Bulletin Of The Polish Academy Of Sciences-technical Sciences 2012.zobacz w PBN
- Katarzyna Derwińska, Magdalena Bartnik, Barbara Wiśniowiecka-Kowalnik, M. Jagła, A. Rudziński, Jacek Pietrzyk, Wanda Kawalec, L. Ziółkowska, Anna Dorota Kutkowska-Kaźmierczak, Anna Gambin, Tomasz Gambin, Maciej Sykulski, Tadeusz Mazurczak, Ewa Obersztyn, Ewa Bocian i Paweł Stankiewicz, Assessment of the role of copy-number variants in 150 patients with congenital heart defects, Developmental Period Medicine 16 (3) 2012, s. 175–182.zobacz w PBN
- A. Charzynska, A. Nalecz, M. Rybinski i A. Gambin, Sensitivity analysis of mathematical models of signalling pathways, Biotechnologia 93 2012, s. Array.zobacz w PBN
- Anna Gambin i Anna Marciniak-Czochra (red.), Watching the Daisies Grow: from Biology to Biomathematics and Bioinformatics, IOS PRESS, NIEUWE HEMWEG 6B, AMSTERDAM, NETHERLANDS, 1013 BG 2012.zobacz w PBN
2011
- Anna Gambin, Maciej Sykulski, Tomasz Gambin, Magdalena Bartnik i Katarzyna Derwińska, Efficient multiple samples aCGH analysis for rare CNVs detection, w: IEEE International Conference Bioinformatics and Biomedicine, 2011.zobacz w PBN
- Anna Gambin, Piotr Dittwald, Jerzy Ostrowski i Jakub Karczmarski, Inferring serum proteolytic activity from LC, w: Proc. IEEE 1st International Conference on Computational Advances in Bio and medical Sciences (ICCABS), 2011.zobacz w PBN
- Anna Gambin, Tomasz Gambin i Paweł Stankiewicz, A stable density approach to probe selection for a custom aCGH design, Biotechnologia 92 (3) 2011, s. 283–295.zobacz w PBN
- Anna Gambin, Tomasz Gambin, Maciej Sykulski i Paweł Stankiewicz, Robustness of exon CGH array designs, w: Proc. Int Conf. on Bioinformatics Models, Methods and Algorithms Bioinformatics'11., 2011.zobacz w PBN
- Anna Gambin i Michał Kistowski, Optimization algorithm for de novo analysis of tandem mass spectrometry data, Biotechnologia 92 (3) 2011, s. 296–300.zobacz w PBN
- Anna Gambin, Maciej Sykulski, Sławomir Lasota, Michał Startek, Gregory Kucherov i Laurent Noe, Subset seed extension to protein BLAST, w: Proc. Int. Conf. on Bioinformatics Models, Methods and Algorithms Bioinformatics'11., 2011.zobacz w PBN
- Anna Gambin, Sławomir Lasota, Michał Lula i Mikołaj Rybiński, Tav4SB: grid environment for analysis of kinetic models of biological systems, w: International Symposium on Bioinformatics Research and Applications (ISBRA), 2018.zobacz w PBN
2009
- Dariusz Grzebelus, Mirosława Gładysz, Alicja Macko-Podgórni, Tomasz Gambin, Barbara Golis, Roksana Rakoczy i Anna Gambin, Population dynamics of miniature inverted-repeat transposable elements (MITEs) in Medicago truncatula, Gene 448 2009, s. 214–220.zobacz w PBN
- Anna Gambin, Ewa Szczurek, Janusz Dutkowski, Magda Bakun i Michał Dadlez, Classification of peptide mass fingerprint data by novel no-regret boosting method, Computers In Biology And Medicine 39 2009, s. 460–473.zobacz w PBN
- Marta Łuksza, Bogusław Kluge, Jerzy Ostrowski, Jakub Karczmarski i Anna Gambin, Two-Stage Model-Based Clustering for Liquid Chromatography Mass Spectrometry Data Analysis, Statistical Applications In Genetics And Molecular Biology 8 2009, s. 15.zobacz w PBN
- Bogusław Kluge, Anna Gambin i Wojciech Niemiro, Modeling Exopeptidase Activity from LC-MS Data, Journal Of Computational Biology 16 (2) 2009, s. 395–406.zobacz w PBN
- Jakub Karczmarski, Anna Gambin, Marta Łuksza, Jerzy Ostrowski i Bogusław Kluge, Two-Stage Model-Based Clustering for Liquid Chromatography Mass Spectrometry Data Analysis, Statistical Applications In Genetics And Molecular Biology 8 (1) 2009, s. 1–37.zobacz w PBN
- Mikhail A. Roytberg, Anna Gambin, Laurent Noé, Sławomir Lasota, Eugenia Furletova, Ewa Szczurek i Gregory Kucherov, On Subset Seeds for Protein Alignment, Ieee-acm Transactions On Computational Biology And Bioinformatics 6 (3) 2009, s. 483–494.zobacz w PBN
- Anna Gambin, D. Grzebelus, M. Gładysz, A. Macko-Podgórni, T. Gambin, B. Golis i R. Rakoczy, Population dynamics of miniature inverted-repeat transposable elements (MITEs) in Medicago truncatula, Gene 448 (2) 2009, s. 214–220.zobacz w PBN
- Anna Gambin, E. Szczurek, J. Dutkowski, M. Bakun i Michał Dadlez, Classification of peptide mass fingerprint data by novel no-regret boosting method, Computers In Biology And Medicine 39 2009, s. 460–473.zobacz w PBN
2008
- Anna Gambin, Piotr Krzyżanowski i Piotr Pokarowski, Aggregation Algorithms for Perturbed Markov Chains with Applications to Networks Modeling, Siam Journal On Scientific Computing 31 (1) 2008, s. 45–73.zobacz w PBN
- Mikhail A. Roytberg, Anna Gambin, Laurent Noé, Sławomir Lasota, Eugenia Furletova, Ewa Szczurek i Gregory Kucherov, Efficient Seeding Techniques for Protein Similarity Search, w: BIRD, 2008.zobacz w PBN
2007
- Łukasz Bolikowski i Anna Gambin, New Metrics for Phylogenies, Fundamenta Informaticae 78 (2) 2007, s. 199–216.zobacz w PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, Krzysztof Kowalczyk, Jerzy Ostrowski, Jarosław Poznański, Jerzy Tiuryn, M. Bakun i Michał Lech Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2007, s. 20–30.zobacz w PBN
- D. Grzebelus, Sławomir Lasota, T. Gambin, G. Kucherov i Anna Gambin, Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula, Bmc Genomics 8 2007, s. 409.zobacz w PBN
- Anna Gambin i P. Wojtalewicz, CTX-BLAST - context sensitive version of protein BLAST, Bioinformatics 23 (13) 2007, s. 1686–1688.zobacz w PBN
- Anna Gambin i Ewa Szczurek, No-regret boosting, Lecture Notes In Computer Science 4431 2007, s. 422–431.zobacz w PBN
- Janusz Józef Dutkowski i Anna Gambin, On consensus biomarker selection, Bmc Bioinformatics 8 2007, s. S5.zobacz w PBN
- Janusz Dutkowski i Anna Gambin, On consensus biomarker selection, Bmc Bioinformatics 8 (Suppl. 5) 2007, s. 1–13.zobacz w PBN
- Dariusz Grzebelus, Sławomir Lasota, Tomasz Gambin, Gregory Kucherov i Anna Gambin, Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula, Bmc Genomics 8 2007, s. 409.zobacz w PBN
- Mikołaj Rybiński i Anna Gambin, Details of the JAK-STAT Signaling Pathway Model, Acta Biochimica Polonica 54 (Suppl. 3) 2007, s. 63–64.zobacz w PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, Krzysztof Kowalczyk, Jerzy Ostrowski, Jarosław Poznański, Jerzy Tiuryn, Magda Bakun i Michał Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2007, s. 20–30.zobacz w PBN
- Ł. Bolikowski i A. Gambin, New Metrics for Phylogenies, Fundamenta Informaticae Vol. 78, nr 2 2007, s. 199–216.zobacz w PBN
2006
- Marta Łuksza, Bogusław Kluge, Jerzy Ostrowski, Jakub Karczmarski i Anna Gambin, Efficient Model-Based Clustering for LC-MS Data, Lecture Notes In Computer Science 4175 2006, s. 32–43.zobacz w PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, K. Kowalczyk, J Ostrowski, Jarosław Poznański, Jerzy Tiuryn, M. Bakun i Michał Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2006, s. 20–30.zobacz w PBN
- Anna Gambin, Sławomir Lasota i Michal Rutkowski, Analyzing stationary states of gene regulatory network using Petri nets, In Silico Biology 6 2006, s. 10.zobacz w PBN
- Anna Gambin, K. Bożek, Bartosz Wilczynski i Jerzy Tiuryn, Automated modeling of genetic control in Arabidopsis thaliana, Journal Of Fruit And Ornamental Plant Research 14 2006, s. 163–171.zobacz w PBN
- Anna Gambin, Jerzy Tiuryn i Jerzy Tyszkiewicz, Alignment with context dependent scoring function, Journal Of Computational Biology 13 (1) 2006, s. 81–101.zobacz w PBN
- Katarzyna Bozek, Anna Gambin, Bartosz Wilczyński i Jerzy Tiuryn, Automated modelling of genetic control in Arabidopsis thaliana, Journal Of Fruit And Ornamental Plant Research 14 2006.zobacz w PBN
- Norbert Dojer, Anna Gambin, A. Mizera, Bartosz Wilczyński i Jerzy Tiuryn, Applying Dynamic Bayesian Networks to Perturbed Gene Expression Data, Bmc Bioinformatics 7 2006, s. 249.zobacz w PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, K. Kowalczyk, J. Ostrowski, J. Poznanski, Jerzy Tiuryn, M. Bakun i M. Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 (1) 2006, s. 20–30.zobacz w PBN
2005
- Anna Gambin i Damian Wójtowicz, Almost FPRAS for Lattice Models of Protein Folding (Extended Abstract), Lecture Notes In Computer Science 3503 2005, s. 534–544.zobacz w PBN
- Anna Gambin i Piotr Slonimski, Hierarchical clustering based upon contextual alignment of proteins: a different way to approach phylogeny, Comptes Rendus Biologies 328 (1) 2005, s. 11–22.zobacz w PBN
- Anna Gambin i Rafał Otto, Contextual multiple sequence alignment, Journal Of Biomedicine And Biotechnology 2 2005, s. 124–131.zobacz w PBN
- Anna Gambin, Jan Hidders, Natalia Kwaśnikowska, Sławomir Lasota, Jacek Sroka, Jerzy Paweł Tyszkiewicz i Jan Van den Bussche, Well Constructed Workflows in Bioinformatics, w: Proc. Workshop on Database Issues in Biological Databases 2005, 2005.zobacz w PBN
2004
- Anna Gambin i Bronisław Kluge, Statistical Significance of Contextual Alignment, w: Proc. 4th European Conference on Computational Biology ECCB 2004, University of Glasgow, Glasgow 2004.zobacz w PBN
- Anna Gambin i Piotr Slonimski, Hierarchical clustering based upon contextual alignment of proteins: a different way to approach phylogeny, w: Comptes Rendus Biologies, Academie des Sciences, Paris 2004.zobacz w PBN
2003
- Anna Gambin i Damian Wójtowicz, Almost FPRAS for Lattice Models of Protein Folding, w: Currents in Computational Molecular Biology 2003, Berlin 2003.zobacz w PBN
- Rafał Otto i Anna Gambin, Contextual Multiple Sequence Alignment (Context helps in aligning orphan genes, w: Currents in Computational Molecular Biology 2003, RECOMB, Berlin 2003.zobacz w PBN
2002
- Anna Gambin, Sławomir Lasota, Radosław Szklarczyk, Jerzy Tiuryn i Jerzy Tyszkiewicz, Contextual Alignment of Biological Sequences, Bioinformatics 18 (2) 2002, s. 116–127.zobacz w PBN
- Anna Gambin i Jerzy Tyszkiewicz, Substitution tables for contextual alignment, w: Journees Ouvertes Biologie Informatique Mathematique, INRIA, Rennes 2002.zobacz w PBN
2001
- Anna Gambin, Sławomir Lasota i M. Dietzfelbinger, On different models for packet flow in multistage interconnection networks, Fundamenta Informaticae 46 (4) 2001, s. 287–314.zobacz w PBN
- Piotr Pokarowski i Anna Gambin, A new combinatorial algorithm for large Markov chains., w: Computer Algebra in Scientific Computing-CASC 2001, Springer-Verlag, Berlin 2001.zobacz w PBN
- Anna Gambin i Piotr Pokarowski, A Combinatorial Aggregation Algorithm for Stationary Distribution of a Large Markov Chain (Extended Abstract), Lecture Notes In Computer Science 2138 2001, s. 384–388.zobacz w PBN
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