Wydział Matematyki, Informatyki i Mechaniki Uniwersytetu Warszawskiego
Publications
Paweł Górecki
2018
- Agnieszka Mykowiecka, Paweł Szczęsny and Paweł Górecki, Inferring gene-species assignments in the presence of horizontal gene transfer, Ieee-acm Transactions On Computational Biology And Bioinformatics 15 (5) 2018, p. 1571–1578.see in PBN
- Michał Ciach, Anna Muszewska and Paweł Górecki, Locus-aware decomposition of gene trees with respect to polytomous species trees, Algorithms For Molecular Biology 13 (11) 2018, p. 1–18.see in PBN
- Paweł Tabaszewski, Paweł Górecki and Oliver Eulenstein, Phylogenetic Consensus for Exact Median Trees, in: BCB '18 Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, New York 2018, p. 366–375.see in PBN
- Paweł Górecki, Alexey Markin and Oliver Eulenstein, Cophenetic Distances: A Near-Linear Time Algorithmic Framework, Lecture Notes In Computer Science 10976 (11) 2018, p. 168–179.see in PBN
- Jarosław Andrzej Paszek and Paweł Górecki, Inferring duplication episodes from unrooted gene trees, Bmc Genomics 19 (5) 2018, p. 288.see in PBN
- Dawid Dąbkowski, Paweł Tabaszewski and Paweł Górecki, Minimizing the deep coalescence cost, Journal Of Bioinformatics And Computational Biology 16 (5) 2018, p. 1840021.see in PBN
- Paweł Górecki and Oliver Eulenstein, Bijective Diameters of Gene Tree Parsimony Costs, Ieee-acm Transactions On Computational Biology And Bioinformatics 15 (5) 2018, p. 1723–1727.see in PBN
- Jarosław Andrzej Paszek and Paweł Górecki, Efficient algorithms for genomic duplication models, Ieee-acm Transactions On Computational Biology And Bioinformatics 15 (5) 2018, p. 1515–24.see in PBN
- Dawid Dąbkowski and Paweł Górecki, Minimising the Deep Coalescence, in: Proceedings of the 10th International Conference on Bioinformatics and Computational Biology, Las Vegas 2018, p. 168–174.see in PBN
2017
- Paweł Górecki, Jarosław Andrzej Paszek and Oliver Eulenstein, Unconstrained Diameters for Deep Coalescence, Ieee-acm Transactions On Computational Biology And Bioinformatics 14 (5) 2017, p. 1002–1012.see in PBN
- Paweł Górecki, Alexey Markin, Agnieszka Mykowiecka, Jarosław Andrzej Paszek and Oliver Eulenstein, Phylogenetic Tree Reconciliation: Mean Values for Fixed Gene Trees, Lecture Notes In Computer Science 10330 2017.see in PBN
- Jarosław Andrzej Paszek and Paweł Górecki, New Algorithms for the Genomic Duplication Problem, Lecture Notes In Computer Science 10562 2017, p. 101–115.see in PBN
- Michał Aleksander Ciach, Anna Muszewska and Paweł Górecki, Detecting Locus Acquisition Events in Gene Trees, Leibniz International Proceedings In Informatics 88 2017, p. 5:1–5:13.see in PBN
2014
- Paweł Górecki and Oliver Eulenstein, Refining Discordant Gene Trees, Bmc Bioinformatics 15(Suppl 13) (S3) 2014.see in PBN
- Paweł Górecki and Oliver Eulenstein, DrML: Probabilistic Modeling of Gene Duplications, Journal Of Computational Biology 21 (1) 2014, p. 89–98.see in PBN
- Paweł Górecki and Oliver Eulenstein, Maximizing Deep Coalescence Cost, Ieee-acm Transactions On Computational Biology And Bioinformatics 11 (1) 2014, p. 231–242.see in PBN
- Paweł Górecki, Jarosław PASZEK and Oliver Eulenstein, Unconstrained Gene Tree Diameters for Deep Coalescence, in: Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, New York 2014.see in PBN
- Paweł Górecki, Jarosław Paszek and Eulenstein Oliver, Duplication Cost Diameters, Lecture Notes In Computer Science 8492 2014, p. 221–223.see in PBN
2013
- Paweł Górecki, Oliver Eulenstein and Jerzy Tiuryn, Unrooted Tree Reconciliation: A Unified Approach, Ieee-acm Transactions On Computational Biology And Bioinformatics 10 (2) 2013, p. 522–536.see in PBN
- Chang Wen-Chien, Paweł Górecki and Oliver Eulenstein, Exact Solutions for Species Tree Inference from Discordant Gene Trees, Journal Of Bioinformatics And Computational Biology 11 (5) 2013, p. 1342005.see in PBN
- Wen-Chieh Chang, Ande Wehe, Paweł Górecki and Oliver Eulenstein, Exact Solutions for Classical Gene Tree Parsimony Problems, 2013.see in PBN
- Paweł Górecki and Oliver Eulentsein, Algorithms for Unrooted Gene Trees with Polytomies, 2013.see in PBN
2012
- Paweł Górecki and Oliver Eulenstein, A Robinson-Foulds Measure to Compare Unrooted Trees with Rooted Trees, Lecture Notes In Computer Science 7292 2012, p. 115–126.see in PBN
- Paweł Górecki and Oliver Eulenstein, Algorithms: Simultaneous Error-Correction and Rooting for Gene Tree Reconciliation and the Gene Duplication Problem, Bmc Bioinformatics 13 (Suppl 10) 2012.see in PBN
- Paweł Górecki and Oliver Eulenstein, Deep Coalescence Reconciliation with Unrooted Gene Trees: Linear Time Algorithms, Lecture Notes In Computer Science 7434 2012, p. 531–542.see in PBN
- Paweł Górecki, Gordon J. Burleigh and Oliver Eulenstein, GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches, Lecture Notes In Computer Science 7292 2012, p. 102–114.see in PBN
- Paweł Górecki and Jerzy Tiuryn, Inferring Evolutionary Scenarios in the Duplication, Loss and Horizontal Gene Transfer Model, Lecture Notes In Computer Science 7230 2012, p. 83–105.see in PBN
- Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Martínez, Robert Otillar, Joseph W. Spatafora, Jagjit S. Yadav, Andrea Aerts, Isabelle Benoit, Alex Boyd, Alexis Carlson, Alex Copeland, Pedro M. Coutinho, Ronald P. de Vries, Patricia Ferreira, Keisha Findley, Brian Foster, Jill Gaskell, Dylan Glotzer, Paweł Górecki, Joseph Heitman, Cedar Hesse, Chiaki Hori, Kiyohiko Igarashi, Joel A. Jurgens, Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kües, T. K. Arun Kumar, Alan Kuo, Kurt LaButti, Luis F. Larrondo, Erika Lindquist, Albee Ling, Vincent Lombard, Susan Lucas, Taina Lundell, Rachael Martin, David J. McLaughlin, Ingo Morgenstern, Emanuelle Morin, Claude Murat, Laszlo G. Nagy, Matt Nolan, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Antonis Rokas, Francisco J. Ruiz-Dueñas, Grzegorz Sabat, Asaf Salamov, Masahiro Samejima, Jeremy Schmutz, Jason C. Slot, Franz St. John, Jan Stenlid, Hui Sun, Sheng Sun, Khajamohiddin Syed, Adrian Tsang, Ad Wiebenga, Darcy Young, Antonio Pisabarro, Daniel C. Eastwood, Francis Martin, Dan Cullen, Igor V. Grigoriev and David S. Hibbett, The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes, Science 336 (6089) 2012, p. 1715–1719.see in PBN
2003
- Paweł Górecki, Maximum likelihood estimation for duplication, loss model, in: Currents in Computational Molecular Biology RECOMB 2003, Berlin 2003.see in PBN
- Paweł Górecki, Single step reconciliation algorihm for duplication, loss and horizontal gene transfer model, in: Proceedings of the ECCB 2003, European Conference on Computational Biology, Paris 2003.see in PBN
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