Wydział Matematyki, Informatyki i Mechaniki Uniwersytetu Warszawskiego
Publications
Jerzy Tiuryn
2016
- Bartosz Wilczyński and Jerzy Tiuryn, FastBill: An Improved Tool for Prediction of Cis-Regulatory Modules, Journal Of Computational Biology 2016.see in PBN
- Aleksander Jankowski, Paulina Obara, Utsav Mathur and Jerzy Tiuryn, Enhanceosome transcription factors preferentially dimerize with high mobility group proteins, Bmc Systems Biology 10 2016, p. 14.see in PBN
- Aleksander Jankowski, Jerzy Tiuryn and Shyam Prabhakar, Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data, Bioinformatics 32 (16) 2016, p. 2419–2426.see in PBN
2015
- Kinga Rutowicz, Marcin Puzio, Joanna Halibart-Puzio, Maciej Lirski, Maciej Kotliński, Magdalena Kroteń, Łukasz Kniżewski, Bartosz Lange, Anna Muszewska, Katarzyna Śniegowska-Świerk, Janusz Kościelak, Roksana Iwanicka-Nowicka, Krisztian Buza, Franciszek Janowiak, Katarzyna Żmuda, Jõesaar Indrek, Katarzyna Laskowska-Kaszub, Anna Fogtman, Hannes Kollist, Piotr Zielenkiewicz, Jerzy Tiuryn, Paweł Siedlecki, Szymon Świeżewski, Krzysztof Ginalski, Marta Koblowska, Rafał Archacki, Bartosz Wilczyński, Marcin Rapacz and Andrzej Jerzmanowski, A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis., Plant Physiology 169 (3) 2015, p. 2080–2101.see in PBN
2014
- Aleksander Jankowski, Shyam Prabhakar and Jerzy Tiuryn, TACO: a general-purpose tool for predicting cell-type–specific transcription factor dimers, Bmc Genomics 15 (1) 2014, p. 208.see in PBN
- MICHAŁ WOŹNIAK, Limsoon Wong and Jerzy Tiuryn, eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains, Bmc Bioinformatics 15 (65) 2014.see in PBN
- Ryszard Rudnicki and Jerzy Tiuryn, Size distribution of gene families in a genome, Mathematical Models & Methods In Applied Sciences 24 (4) 2014, p. 697–717.see in PBN
- Michał Woźniak, Jerzy Tiuryn and Limsoon Wong, GWAMAR: Genome-wide assessment of mutations associated with drug resistance in bacteria, Bmc Genomics 15 (Suppl 10) 2014, p. S10.see in PBN
2013
- Aleksander Jankowski, Ewa Szczurek, Ralf Jauch, Jerzy Tiuryn and Shyam Prabhakar, Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers, Genome Research 23 (8) 2013, p. 1307–1318.see in PBN
- Paweł Górecki, Oliver Eulenstein and Jerzy Tiuryn, Unrooted Tree Reconciliation: A Unified Approach, Ieee-acm Transactions On Computational Biology And Bioinformatics 10 (2) 2013, p. 522–536.see in PBN
- Janusz Bujnicki and Jerzy Tiuryn, Bioinformatics and computational biology in Poland, Plos Computational Biology 2013.see in PBN
- Janusz Józef Dutkowski and Jerzy Tiuryn, A probabilistic model of neutral and selective dynamics of protein network evolution, Journal Of Computational Biology 20 (9) 2013, p. 631–642.see in PBN
2012
- Paweł Górecki and Jerzy Tiuryn, Inferring Evolutionary Scenarios in the Duplication, Loss and Horizontal Gene Transfer Model, Lecture Notes In Computer Science 7230 2012, p. 83–105.see in PBN
- Przemysław Biecek, Ewa Szczurek, Martin Vingron and Jerzy Tiuryn, The R Package bgmm: Mixture Modeling with Uncertain Knowledge, Journal Of Statistical Software 47 (3) 2012, p. 1–31.see in PBN
- Michał Woźniak, Jerzy Tiuryn and Limsoon Wong, An approach to identifying drug resistance associated mutations in bacterial strains, Bmc Genomics 13 (Suppl. 7):S2 2012.see in PBN
2011
- Maciej Jończyk, Alicja Sobkowiak, Paweł Siedlecki, Przemysław Biecek, Joanna Trzcińska-Danielewicz, Jerzy Tiuryn, Jan Fronk and Paweł Sowiński, Rhythmic diel pattern of gene expression in juvenile maize leaf, Plos One 2011, p. 1.see in PBN
- Norbert Dojer, Przemysław Biecek and Jerzy Tiuryn, Bi-Billboard: Symmetrization and Careful Choice of Informant Species Results in Higher Accuracy of Regulatory Element Prediction, Journal Of Computational Biology 18 (6) 2011, p. 809–819.see in PBN
- Ewa Szczurek, Florian Markowetz, Irit Gat-Viks, Przemysław Biecek, Jerzy Tiuryn and Martin Vingron, Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data, Bmc Bioinformatics 12 2011, p. 1–19.see in PBN
- Michał Woźniak, L. Wong and Jerzy Tiuryn, CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains, Bioinformatics 27 (23) 2011, p. 3313–3314.see in PBN
- Michał Woźniak, L. Wong and Jerzy Tiuryn, CAMBer: an approach to support comparative analysis of multiple bacterial strains, Bmc Genomics 12 (2) 2011, p. 6.see in PBN
2009
- Bartosz Wilczyński, Norbert Dojer, Mateusz Patelak and Jerzy Tiuryn, Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs, Bmc Bioinformatics 10 2009, p. 82.see in PBN
- Janusz Dutkowski and Jerzy Tiuryn, Phylogeny-guided interaction mapping in seven eukaryotes, Bmc Bioinformatics 10 2009, p. 393.see in PBN
- Ewa Szczurek, Irit Gat-Viks, Jerzy Tiuryn and Martin Vingron, Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments, Molecular Systems Biology 10 2009, p. 82.see in PBN
2007
- Paweł Górecki and Jerzy Tiuryn, Inferring phylogeny from whole genomes, Bioinformatics 23 2007, p. 116–122.see in PBN
- Janusz Dutkowski and Jerzy Tiuryn, Identification of functional modules from conserved ancestral protein-protein interactions, Bioinformatics 23 2007, p. 149–158.see in PBN
- Bartek Wilczyński and Jerzy Tiuryn, Reconstruction of Mammalian Cell Cycle Regulatory Network from Microarray Data using Stochastic Logical Networks, Lecture Notes In Computer Science 4695 2007, p. 121–135.see in PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, Krzysztof Kowalczyk, Jerzy Ostrowski, Jarosław Poznański, Jerzy Tiuryn, Magda Bakun and Michał Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2007, p. 20–30.see in PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, Krzysztof Kowalczyk, Jerzy Ostrowski, Jarosław Poznański, Jerzy Tiuryn, M. Bakun and Michał Lech Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2007, p. 20–30.see in PBN
- Michał Drabikowski, Szymon Nowakowski and Jerzy Tiuryn, Library of Local Descriptors Models the Core of Proteins Accurately, Proteins-structure Function And Bioinformatics 69 (3) 2007, p. 499–510.see in PBN
- Jerzy Tiuryn and Damian Wójtowicz, Evolution of gene families based on gene duplication, loss, accumulated change, and innovation, Journal Of Computational Biology 14 (4) 2007, p. 479–495.see in PBN
- Jerzy Tiuryn, Damian Wójtowicz and Ryszard Rudnicki, A Discrete Model of Evolution of Small Paralog Families, Mathematical Models & Methods In Applied Sciences 17 (6) 2007, p. 933–956.see in PBN
- Paweł Górecki and Jerzy Tiuryn, URec: a system for unrooted reconciliation, Bioinformatics 23 (4) 2007, p. 511–512.see in PBN
2006
- Anna Gambin, K. Bożek, Bartosz Wilczynski and Jerzy Tiuryn, Automated modeling of genetic control in Arabidopsis thaliana, Journal Of Fruit And Ornamental Plant Research 14 2006, p. 163–171.see in PBN
- Anna Gambin, Jerzy Tiuryn and Jerzy Tyszkiewicz, Alignment with context dependent scoring function, Journal Of Computational Biology 13 (1) 2006, p. 81–101.see in PBN
- Norbert Dojer, Anna Gambin, A. Mizera, Bartosz Wilczyński and Jerzy Tiuryn, Applying Dynamic Bayesian Networks to Perturbed Gene Expression Data, Bmc Bioinformatics 7 2006, p. 249.see in PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, K. Kowalczyk, J. Ostrowski, J. Poznanski, Jerzy Tiuryn, M. Bakun and M. Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 (1) 2006, p. 20–30.see in PBN
- Ryszard Rudnicki, Jerzy Tiuryn and Damian Wójtowicz, A model for the evolution of paralog families in genomes, Journal Of Mathematical Biology 53 (5) 2006, p. 759–770.see in PBN
- Paweł Górecki and Jerzy Tiuryn, DLS-trees: a model of evolutionary scenarios, Theoretical Computer Science 359 (1-3) 2006, p. 378–399.see in PBN
- Damian Wójtowicz and Jerzy Tiuryn, On genome evolution with accumulated change and innovation, Lecture Notes In Computer Science 4205 2006, p. 40–50.see in PBN
- Damian Wójtowicz and Jerzy Tiuryn, On genome evolution with innovation, Lecture Notes In Computer Science 4162 2006, p. 801–811.see in PBN
- Bartek Wilczyński and Jerzy Tiuryn, Regulatory Network Reconstruction using Stochastic Logical Networks, Lecture Notes In Computer Science 4210 2006, p. 142–154.see in PBN
- Katarzyna Bozek, Anna Gambin, Bartosz Wilczyński and Jerzy Tiuryn, Automated modelling of genetic control in Arabidopsis thaliana, Journal Of Fruit And Ornamental Plant Research 14 2006.see in PBN
- Bartek Wilczyński, Tr. Hvidsten, A. Kryshtafovych, Jerzy Tiuryn, J. Komorowski and K. Fidelis, Using local gene expression similarities to discover regulatory binding site modules, Bmc Bioinformatics 7 2006, p. 505.see in PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, K. Kowalczyk, J Ostrowski, Jarosław Poznański, Jerzy Tiuryn, M. Bakun and Michał Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2006, p. 20–30.see in PBN
2005
- T. Hvidsten, B. Wilczyński, A. Kryshtafovych, Jerzy Tiuryn, J. Komorowski and K. Fidelis, Discovering regulatory binding site modules using rule-based learning, Genome Research 15 2005, p. 856–866.see in PBN
- Michał Drabikowski, Krzysztof Fidelis, Andriy Kryshtafovych and Jerzy Tiuryn, Local Descriptors' Library Models the Core of Protein Structures Accurately, in: RECOMB 2005 Poster Abstracts, Ź
Broad Institute of MIT and Harvard Ź, Boston USA 2005.see in PBN
2004
- Viviana Bono, Jerzy Tiuryn and Paweł Urzyczyn, Type inference for nested self types, Lecture Notes In Computer Science 3085 2004, p. 99–114.see in PBN
- Jerzy Tiuryn, Ryszard Rudnicki and Damian Wójtowicz, A Case Study of Genome Evolution: From Continuous to Discrete Time Model, Lecture Notes In Computer Science 3153 2004, p. 1–24.see in PBN
- Paweł Górecki and Jerzy Tiuryn, On the structure of reconciliations, Lecture Notes In Computer Science 3388 2004, p. 42–54.see in PBN
- Jerzy Tiuryn and Damian Wójtowicz, A Markovian model of genome evolution: distribution of paralogs, in: RECOMB 2004, Currents in Computational Molecular Biology, University of California at San Diego, San Diego 2004.see in PBN
2003
- Szymon Nowakowski, Andriey Kryshtafovych, Krzysztof Fidelis and Jerzy Tiuryn, Detecting Local Structure in proteins by Analyzing Motif Sequence Signatures, in: Proceedings of the European Conference on Computational Biology in Conjunction with the French National Conference on Bioinformatics, Paris 2003.see in PBN
- Dexter Kozen and Jerzy Tiuryn, Substructural Logic and Partial Correctness, in: ACM Transactions on Computational Logic, New York 2003.see in PBN
- Agnes Szczepek, Jerzy Tiuryn and Bartosz Wilczynski, Designing DNA-microarray Probes Opimized for Hybridization Probability, in: Currents in Computtaional Molecular Biology (RECOMB), Berlin 2003.see in PBN
- Dexter Kozen and Jerzy Tiuryn, Substructural Logic and Partial Correctness, Acm Transactions On Computational Logic 4 (3) 2003, p. 355–378.see in PBN
2002
- Jerzy Tiuryn and Paweł Urzyczyn, The subtyping problem for second-order types is undecidable, Information And Computation 179 2002, p. 1–18.see in PBN
- Jerzy Tiuryn and Viviana Bono, Products and Polymorphic Subtypes, Fundamenta Informaticae 51 (1,2) 2002, p. 13–41.see in PBN
- Anna Gambin, Sławomir Lasota, Radosław Szklarczyk, Jerzy Tiuryn and Jerzy Tyszkiewicz, Contextual Alignment of Biological Sequences, Bioinformatics 18 (2) 2002, p. 116–127.see in PBN
- Jerzy Tiuryn, Hoare logic: from first-order to propositional formalism, in: Proofs and System-Reliability, Kluwer Academic Publishers, Dordrecht 2002.see in PBN
- V. Bono and J. Tiuryn, Products and Polymorphic Subtypes, Fundamenta Informaticae Vol. 51, nr 1,2 2002, p. 13–41.see in PBN
2000
- Jerzy Tiuryn and D Kozen, On the completeness of propositional Hoare Logic, in: 5th Int. Seminar Relational Methods in Computer Science, Universite Laval, Quebec, Canada 2000.see in PBN
- Jerzy Tiuryn, Dexter Kozen and David Harel, Dynamic Logic, The MIT Press, Cambridge, MA 2000.see in PBN
- Jerzy Tiuryn (ed.), Proc. Foundations of Software Science and Computation Structures, Springer Verlag, Berlin 2000.see in PBN
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